ISDA: 8XCH

Deposition Date 2023-12-09

Release Date 2025-06-11

Last Version Date 2025-06-11

Entry Detail

PDB ID:

8XCH

EMDB ID:

EMD-38243

Keywords:

VIRAL PROTEIN

Title:

SARS-CoV-2 Replication-Transcription Complex has a dimer-of-dimeric architecture (ddRTC) in pre-capping initiation.

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.40 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Replicase polyprotein 1ab
Gene (Uniprot):rep
Chain IDs:A, I, Q, Y
Chain Length:83
Number of Molecules:4
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF08717, PF20632, PF20633, PF20631, PF13087, PF06478, PF00680 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 8
Gene (Uniprot):rep
Chain IDs:B, D, J, L, R, T, Z, BA (auth: b)
Chain Length:198
Number of Molecules:8
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF08717, PF20632, PF20633, PF20631, PF13087, PF06478, PF00680 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 7
Chain IDs:C, K, S, AA (auth: a)
Chain Length:83
Number of Molecules:4
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC1 Pfam ID:PF08716

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Helicase
Gene (Uniprot):rep
Chain IDs:E, F, M, N, U, V, CA (auth: c), DA (auth: d)
Chain Length:601
Number of Molecules:8
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF08717, PF20632, PF20633, PF20631, PF13087, PF06478, PF00680 EC:2.7.7.48

Polymer Type:polyribonucleotide
Molecule:RNA (39-MER)
Chain IDs:G, O, W, EA (auth: e)
Chain Length:39
Number of Molecules:4
Biological Source:synthetic construct

Polymer Type:polyribonucleotide
Molecule:RNA (39-MER)
Chain IDs:H, P, X, FA (auth: f)
Chain Length:39
Number of Molecules:4
Biological Source:synthetic construct

Ligand Molecules