8XCD image
Deposition Date 2023-12-08
Release Date 2024-11-13
Last Version Date 2024-11-27
Entry Detail
PDB ID:
8XCD
Title:
Macaca fascicularis NTCP in complex with YN69083 Fab
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.49 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Solute carrier family 10 member a1
Gene (Uniprot):Slc10a1
Chain IDs:A
Chain Length:351
Number of Molecules:1
Biological Source:Macaca fascicularis
Polymer Type:polypeptide(L)
Molecule:YN69083 Fab Heavy chain
Chain IDs:B (auth: H)
Chain Length:255
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:YN69083 Fab Light chain
Chain IDs:C (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural basis for hepatitis B virus restriction by a viral receptor homologue.
Nat Commun 15 9241 9241 (2024)
PMID: 39455604 DOI: 10.1038/s41467-024-53533-6

Abstact

Macaque restricts hepatitis B virus (HBV) infection because its receptor homologue, NTCP (mNTCP), cannot bind preS1 on viral surface. To reveal how mNTCP loses the viral receptor function, we here solve the cryo-electron microscopy structure of mNTCP. Superposing on the human NTCP (hNTCP)-preS1 complex structure shows that Arg158 of mNTCP causes steric clash to prevent preS1 from embedding onto the bile acid tunnel of NTCP. Cell-based mutation analysis confirms that only Gly158 permitted preS1 binding, in contrast to robust bile acid transport among mutations. As the second determinant, Asn86 on the extracellular surface of mNTCP shows less capacity to restrain preS1 from dynamic fluctuation than Lys86 of hNTCP, resulting in unstable preS1 binding. Additionally, presence of long-chain conjugated-bile acids in the tunnel induces steric hindrance with preS1 through their tailed-chain. This study presents structural basis in which multiple sites in mNTCP constitute a molecular barrier to strictly restrict HBV.

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Primary Citation of related structures