8XBF image
Entry Detail
PDB ID:
8XBF
EMDB ID:
Keywords:
Title:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with antibody O5C2
Biological Source:
PDB Version:
Deposition Date:
2023-12-06
Release Date:
2024-06-19
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:T19I, L24S, 25-27del, 69-70del, G142D, V213G, G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H, D614G, H655Y, N679K, P681H, R682G, R683S, R685S, N764K, D796Y, F817P, N856K, A892P, A899P, A942P, Q954H, N969K, K986, V987P
Chain IDs:A, B, C
Chain Length:1278
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:O5C2, heavy chain
Chain IDs:D, F
Chain Length:122
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:O5C2, light chain
Chain IDs:E, G
Chain Length:109
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Functional and structural investigation of a broadly neutralizing SARS-CoV-2 antibody.
JCI Insight 9 ? ? (2024)
PMID: 38775156 DOI: 10.1172/jci.insight.179726

Abstact

Since its emergence, SARS-CoV-2 has been continuously evolving, hampering the effectiveness of current vaccines against COVID-19. mAbs can be used to treat patients at risk of severe COVID-19. Thus, the development of broadly protective mAbs and an understanding of the underlying protective mechanisms are of great importance. Here, we isolated mAbs from donors with breakthrough infection with Omicron subvariants using a single-B cell screening platform. We identified a mAb, O5C2, which possesses broad-spectrum neutralization and antibody-dependent cell-mediated cytotoxic activities against SARS-CoV-2 variants, including EG.5.1. Single-particle analysis by cryo-electron microscopy revealed that O5C2 targeted an unusually large epitope within the receptor-binding domain of spike protein that overlapped with the angiotensin-converting enzyme 2 binding interface. Furthermore, O5C2 effectively protected against BA.5 Omicron infection in vivo by mediating changes in transcriptomes enriched in genes involved in apoptosis and interferon responses. Our findings provide insights into the development of pan-protective mAbs against SARS-CoV-2.

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Primary Citation of related structures