8XAC image
Deposition Date 2023-12-03
Release Date 2024-10-09
Last Version Date 2024-10-09
Entry Detail
PDB ID:
8XAC
Keywords:
Title:
Crystal structure of amidase from Pseudonocardia acaciae
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.02 Å
R-Value Free:
0.25
R-Value Work:
0.20
Space Group:
I 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Amidase family protein
Chain IDs:A, B, C, D
Chain Length:467
Number of Molecules:4
Biological Source:Pseudonocardia acaciae
Primary Citation
Characterizing an amidase and its operon from actinomycete bacteria responsible for paraben catabolism.
Biosci.Biotechnol.Biochem. 88 1047 1054 (2024)
PMID: 38886122 DOI: 10.1093/bbb/zbae083

Abstact

Hydrazidase from Microbacterium hydrocarbonoxydans was revealed to catalyze synthetic hydrazide compounds, enabling the bacteria to grow with them as a sole carbon source, but natural substrates have remained unknown. In this study, kinetic analyses of hydrazidase with parabens showed that the compounds can be substrates. Then, methylparaben induced gene expressions of the operon containing hydrazidase and ABC transporter, and the compound as a sole carbon source was able to grow the bacteria. Furthermore, homology search was carried out revealing that several actinomycetes possess hydrazidase homologs in the operon. Among those bacteria, an amidase from Pseudonocardia acaciae was subjected to a kinetic analysis and a structure determination revealing similar but not identical to those of hydrazidase. Since parabens are reported to exist in plants and soil, and several actinomycetes code the homologous operon, the enzymes with those operons may play a physiologically important role for bacterial survival with use of parabens.

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