ISDA

Entry Detail

PDB ID:

8XA0

EMDB ID:

EMD-38190

Keywords:

VIRUS

Title:

penton capsomer of the VZV C-capsid

Biological Source:

Source Organism:

Human alphaherpesvirus 3

Host Organism:

Homo sapiens

PDB Version:

Deposition Date:

2023-12-01

Release Date:

2024-12-04

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Large tegument protein deneddylase
Chain IDs:A (auth: 2), J (auth: y)
Chain Length:47
Number of Molecules:2
Biological Source:Human alphaherpesvirus 3

UniProt ID:P10220

Protein Blast

Polymer Type:polypeptide(L)
Description:Major capsid protein
Chain IDs:B (auth: A), C, D (auth: E), E (auth: F), F (auth: G)
Chain Length:1370
Number of Molecules:5
Biological Source:Human alphaherpesvirus 3

UniProt ID:Q6QCL5 Pfam ID:PF03122

Protein Blast

Polymer Type:polypeptide(L)
Description:Tri2A
Chain IDs:K (auth: R)
Chain Length:256
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:P09291 Pfam ID:PF01802

Protein Blast

Polymer Type:polypeptide(L)
Description:Tri2B
Chain IDs:L (auth: V)
Chain Length:263
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:P09291 Pfam ID:PF01802

Protein Blast

Polymer Type:polypeptide(L)
Description:Tri1
Chain IDs:M (auth: Z)
Chain Length:286
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:P09276 Pfam ID:PF03327

Protein Blast

Polymer Type:polypeptide(L)
Description:Capsid vertex component 1
Chain IDs:G (auth: h)
Chain Length:696
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:P10201 Pfam ID:PF04559

Protein Blast

Polymer Type:polypeptide(L)
Description:Capsid vertex component 2
Chain IDs:H (auth: q), I (auth: u)
Chain Length:94
Number of Molecules:2
Biological Source:Human alphaherpesvirus 3

UniProt ID:P10209

Ligand Molecules

Primary Citation

Insights into varicella-zoster virus assembly from the B- and C-capsid at near-atomic resolution structures

Cao, L, Wang, N, Lv, Z, Chen, W, Chen, Z, Song, L, Sha, X, Wang, G, Hu, Y, Lian, X, Cui, G, Fan, J, Quan, Y, Liu, H, Hou, H, Wang, X.Show

Hlife 2 64 74 (2024)

DOI: 10.1016/j.hlife.2023.10.007

Primary Citation of related structures