ISDA

Entry Detail

PDB ID:

8X9W

EMDB ID:

EMD-38186

Keywords:

VIRAL PROTEIN

Title:

portal vertex capsomer of the VZV C-Capsid

Biological Source:

Source Organism:

Human alphaherpesvirus 3

Host Organism:

Homo sapiens

PDB Version:

Deposition Date:

2023-12-01

Release Date:

2025-04-30

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.50 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Major capsid protein
Chain IDs:A, C
Chain Length:1387
Number of Molecules:2
Biological Source:Human alphaherpesvirus 3

UniProt ID:P09245 Pfam ID:PF03122

Polymer Type:polypeptide(L)
Description:coiled-coil domain of portal
Chain IDs:B, E (auth: H), F (auth: I), G (auth: J), H (auth: K), I (auth: L), K (auth: Q), L (auth: R), M (auth: S), N (auth: T)
Chain Length:87
Number of Molecules:10
Biological Source:Human alphaherpesvirus 3

Protein Blast

Polymer Type:polypeptide(L)
Description:Tri2A
Chain IDs:D (auth: F)
Chain Length:297
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:P09291 Pfam ID:PF01802

Protein Blast

Polymer Type:polypeptide(L)
Description:Tri2B
Chain IDs:J (auth: O)
Chain Length:307
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:P09291 Pfam ID:PF01802

Protein Blast

Polymer Type:polypeptide(L)
Description:Tri1
Chain IDs:O (auth: X)
Chain Length:289
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:P09276 Pfam ID:PF03327

Protein Blast

Polymer Type:polypeptide(L)
Description:CVC1
Chain IDs:P (auth: k)
Chain Length:87
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:P10201 Pfam ID:PF04559

Protein Blast

Polymer Type:polypeptide(L)
Description:Capsid vertex component 2
Chain IDs:Q (auth: l), R (auth: m)
Chain Length:87
Number of Molecules:2
Biological Source:Human alphaherpesvirus 3

UniProt ID:P10209

Protein Blast

Polymer Type:polypeptide(L)
Description:Large tegument protein deneddylase
Chain IDs:S (auth: n), T (auth: o)
Chain Length:47
Number of Molecules:2
Biological Source:Human alphaherpesvirus 3

UniProt ID:P10220

Ligand Molecules

Primary Citation

Insights into varicella-zoster virus assembly from the B- and C-capsid at near-atomic resolution structures

Cao, L, Wang, N, Lv, Z, Chen, W, Chen, Z, Song, L, Sha, X, Wang, G, Hu, Y, Lian, X, Cui, G, Fan, J, Quan, Y, Liu, H, Hou, H, Wang, X.Show

Hlife 2 64 74 (2024)

DOI: 10.1016/j.hlife.2023.10.007

Primary Citation of related structures