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8X9C image
Deposition Date 2023-11-29
Release Date 2025-06-11
Last Version Date 2025-12-24
Entry Detail
PDB ID:
8X9C
Keywords:
Title:
Class I terpene synthase: eudesmanediol synthase (apo-PeTS3)
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.68 Å
R-Value Free:
0.20
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Terpenoid synthase
Gene (Uniprot):PEX2_005160
Chain IDs:A, B
Chain Length:330
Number of Molecules:2
Biological Source:Penicillium expansum
Primary Citation
Dihydroxy Terpene Synthase: Spatiotemporally Precise Manipulation of Water-Mediated Dihydroxylation via Stepwise Quenching of Carbocations.
J.Am.Chem.Soc. 147 45822 45831 (2025)
PMID: 41273278 DOI: 10.1021/jacs.5c19381

Abstact

Biosynthesis of hydroxy terpenes, which possess better solubility and target-binding capability than terpene hydrocarbons, generally needs cascaded catalysis of terpene synthase (TS) and cytochrome P450 oxygenase. Interestingly, some TSs can directly generate hydroxy terpenes (mostly monohydroxy terpenes) independent of oxygenases. There are even rare TSs that can form dihydroxy terpenes directly. Nevertheless, the structure and catalytic mechanism of dihydroxy terpene synthases (DHTSs) remain elusive to date, hindering their practical applications. Through protein crystallography, multiscale simulations, and site-directed mutagenesis, we elucidate a stepwise carbocation quenching mechanism. In this process, two water molecules are strictly manipulated by a dynamic hydrogen-bond network to quench the carbocation intermediates. Most importantly, Tyr312 was identified as the indispensable and irreplaceable residue for initiating the reprotonation of the monohydroxy terpene. The spatiotemporally precise manipulation mechanism of DHTSs enriches the knowledge of TSs and lays a foundation for developing an oxygenase-independent biosynthesis system of multihydroxy terpenes.

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Primary Citation of related structures
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