8X8F image
Deposition Date 2023-11-27
Release Date 2024-11-27
Last Version Date 2025-12-17
Entry Detail
PDB ID:
8X8F
Keywords:
Title:
Crystal structure of lipoxygenase from Enhygromyxa salina
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Arachidonate 15-lipoxygenase
Gene (Uniprot):DB30_08017
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:650
Number of Molecules:12
Biological Source:Enhygromyxa salina
Ligand Molecules
Primary Citation
Discovery and Molecular Characterization of a Novel 9 S -Lipoxygenase from Enhygromyxa salina for Fatty Acid Biotransformations.
J.Agric.Food Chem. 72 26263 26273 (2024)
PMID: 39536131 DOI: 10.1021/acs.jafc.4c01258

Abstact

Iron-dependent lipoxygenases (LOXs) are involved in the synthesis of oxylipins from polyunsaturated fatty acids. However, they are usually difficult to overexpress in functional form in microbial cell factories. Moreover, 9-LOXs, generating 9-hydroperoxy fatty acids from C18 polyunsaturated fatty acids, have rarely been found from microbial sources. Here, we discovered a novel 9S-LOX in the marine myxobacterium Enhygromyxa salina (Es-9S-LOX). The recombinant enzyme produced in Escherichia coli exhibited remarkable activity in the dioxygenation of linoleic acid (LA, 1), α-linolenic acid, γ-linolenic acid, and arachidonic acid specifically at the C9 position to yield the product with (S)-configuration at catalytic efficiency of 3.94, 1.42, 1.38, and 0.69 μM-1·s-1, respectively. The elucidated X-ray crystal structure of Es-9S-LOX reveals a long and narrow hydrophobic pocket that allows the substrate to be near the metal ion and the oxygen tunnel. The enzyme was successfully used in a chemoenzymatic reaction to generate a hydroxy fatty acid from LA. Our study thus contributes to the valorization of renewable polyunsaturated fatty acids into a variety of fatty acid derivatives, including hydroxy fatty acids.

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Primary Citation of related structures
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