8X7K image
Entry Detail
PDB ID:
8X7K
EMDB ID:
Title:
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-11-24
Release Date:
2024-08-07
Method Details:
Experimental Method:
Resolution:
3.27 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Histone H3.2
Chain IDs:A, E
Chain Length:97
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H4
Chain IDs:B, F
Chain Length:82
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H2A type 1-B/E
Chain IDs:C
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H2B type 1-K
Chain IDs:D, H
Chain Length:94
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H2A type 1-B/E
Chain IDs:G
Chain Length:108
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (143-MER)
Chain IDs:I
Chain Length:143
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (143-MER)
Chain IDs:J
Chain Length:143
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ubiquitin-conjugating enzyme E2 D3
Chain IDs:K
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:E3 ubiquitin-protein ligase RNF168
Chain IDs:L
Chain Length:113
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168
Biorxiv ? ? ? (2024)
DOI: 10.1101/2024.01.02.573964
Primary Citation of related structures