8X6B image
Entry Detail
PDB ID:
8X6B
Keywords:
Title:
Crystal structure of immune receptor PVRIG in complex with ligand Nectin-2
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-11-21
Release Date:
2024-04-24
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nectin-2
Chain IDs:B (auth: A)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Transmembrane protein PVRIG
Chain IDs:A (auth: B)
Chain Length:141
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for the immune recognition and selectivity of the immune receptor PVRIG for ligand Nectin-2.
Structure 32 918 929.e4 (2024)
PMID: 38626767 DOI: 10.1016/j.str.2024.03.012

Abstact

Nectin and nectin-like (Necl) co-receptor axis, comprised of receptors DNAM-1, TIGIT, CD96, PVRIG, and nectin/Necl ligands, is gaining prominence in immuno-oncology. Within this axis, the inhibitory receptor PVRIG recognizes Nectin-2 with high affinity, but the underlying molecular basis remains unknown. By determining the crystal structure of PVRIG in complex with Nectin-2, we identified a unique CC' loop in PVRIG, which complements the double-lock-and-key binding mode and contributes to its high affinity for Nectin-2. The association of the corresponding charged residues in the F-strands explains the ligand selectivity of PVRIG toward Nectin-2 but not for Necl-5. Moreover, comprehensive comparisons of the binding capacities between co-receptors and ligands provide innovative insights into the intra-axis immunoregulatory mechanism. Taken together, these findings broaden our understanding of immune recognition and regulation mediated by nectin/Necl co-receptors and provide a rationale for the development of immunotherapeutic strategies targeting the nectin/Necl axis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures