8X4S image
Entry Detail
PDB ID:
8X4S
Keywords:
Title:
The L-tryptophan specific decarboxylase PsiD covalent bonding with tryptamine
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-11-15
Release Date:
2024-11-20
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:L-tryptophan decarboxylase
Chain IDs:A (auth: I), C (auth: G), E (auth: A), G (auth: C), I (auth: E), K
Chain Length:402
Number of Molecules:6
Biological Source:Psilocybe cubensis
Polymer Type:polypeptide(L)
Description:L-tryptophan decarboxylase
Chain IDs:B (auth: J), D (auth: H), F (auth: B), H (auth: D), J (auth: F), L
Chain Length:36
Number of Molecules:6
Biological Source:Psilocybe cubensis
Ligand Molecules
Primary Citation
Structural basis for psilocybin biosynthesis.
Nat Commun 16 2827 2827 (2025)
PMID: 40121242 DOI: 10.1038/s41467-025-58239-x

Abstact

Psilocybin shows significant therapeutic potential for psilocybin-assisted psychotherapy in addressing various psychiatric conditions. The biosynthetic approach promises rapid and efficient production of psilocybin. Understanding the enzymes that contribute to the biosynthesis of psilocybin can enhance its production process. In this study, we elucidate the crystal structures of L-tryptophan-specific decarboxylase PsiD in both its apo and tryptamine-bound states, the 4-hydroxytryptamine kinase PsiK bound to its substrate, and several forms of the methyltransferase PsiM in either apo or substrate-bound forms derived from the psychedelic mushroom. Structure-based evaluations reveal the mechanisms of self-cleavage and self-inhibition in PsiD, along with the sequential catalytic steps from 4-hydroxytryptamine to the final compound, psilocybin. Additionally, we showcase the antidepressant properties of biosynthetic intermediates of psilocybin on female mice experiencing depression-like behaviors induced by sub-chronic variable stress. Our studies establish a structural basis for the future biosynthetic production of psilocybin using these enzymes and emphasize the clinical potential of norbaeocystin.

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