8X4D image
Entry Detail
PDB ID:
8X4D
EMDB ID:
Title:
Cryo-EM structure of Ryanodine receptor 1 (TM helix S0,20 uM Ca2+, 2 mM ATP)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-11-15
Release Date:
2025-03-05
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ryanodine receptor 1
Chain IDs:A, B, C, D
Chain Length:5037
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Primary Citation
Structural insights into transmembrane helix S0 facilitated RyR1 channel gating by Ca 2+ /ATP.
Nat Commun 16 1936 1936 (2025)
PMID: 39994184 DOI: 10.1038/s41467-025-57074-4

Abstact

The type-1 ryanodine receptor (RyR1) is an intracellular calcium release channel for skeletal muscle excitation-contraction coupling. Previous structural studies showed that the RyR1 activity is modulated by the exogenous regulators including caffeine, ryanodine, PCB-95 and diamide. An additional transmembrane helix, located adjacent to S1 and S4, has been observed in some structures, although its function remains unclear. Here, we report that using a mild purification procedure, this helix is co-purified with RyR1 and is designated as S0. When RyR1 is coupled with S0, it can be activated by Ca2+ to an open state; however when decoupled from S0, it remains in primed state. S0 regulates the channel conformation by directly affecting the TM domain via the pVSD-S0-S4/S5 linker coupling, which facilitates the dilation of S6. Our results demonstrate that S0 is an essential component of RyR1 and plays a key role in the physiological regulation of RyR1 channel gating.

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