8X3X image
Deposition Date 2023-11-14
Release Date 2024-11-20
Last Version Date 2025-06-04
Entry Detail
PDB ID:
8X3X
Title:
ThDP-dependent HKA synthase
Biological Source:
Source Organism:
Brevibacillus (Taxon ID: 55080)
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.19
R-Value Work:
0.15
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:BbmA
Chain IDs:A, B
Chain Length:584
Number of Molecules:2
Biological Source:Brevibacillus
Primary Citation
Structural insights into two thiamine diphosphate-dependent enzymes and their synthetic applications in carbon-carbon linkage reactions.
Nat.Chem. ? ? ? (2025)
PMID: 40369129 DOI: 10.1038/s41557-025-01822-y

Abstact

The α-hydroxy-β-keto acid synthases are thiamine diphosphate-dependent enzymes catalysing carbon-carbon linkage reactions in the biosynthesis of primary metabolites and various secondary metabolites. However, the substrate selectivity and catalytic stereoselectivity of α-hydroxy-β-keto acid synthases are poorly understood, greatly hindering their synthetic application in generating diverse carbon frameworks. We here report the discovery of two new α-hydroxy-β-keto acid synthases CsmA and BbmA, which show different substrate selectivities in catalysing carbon-carbon coupling reactions between two β-keto acids. Four crystal structures of CsmA or BbmA complexed with thiamine diphosphate and their substrates were determined, clearly revealing their structural bases of substrate selectivity and catalytic stereoselectivity. Substrate scope expansion enables us to generate 120 α-hydroxy-β-keto acids together with 240 NaBH4-reduction products. Furthermore, we applied CsmA and BbmA into enzymatic total synthesis, generating 36 γ-butyrolactone-containing furanolides. These results provide new structural insights into the catalyses of α-hydroxy-β-keto acid synthases and highlight their great potential in carboligation catalysis and synthetic applications.

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