8X1I image
Deposition Date 2023-11-07
Release Date 2024-11-13
Last Version Date 2025-07-16
Entry Detail
PDB ID:
8X1I
Title:
ParM present of genome of Desufitobacterium hafniense - Dh-cParM1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ParM present of genome of Desufitobacterium hafniense - Dh-cParM1
Gene (Uniprot):DSY2109
Chain IDs:A (auth: B)
Chain Length:369
Number of Molecules:1
Biological Source:Desulfitobacterium hafniense Y51
Primary Citation
Bacterial genome-encoded ParMs.
J.Biol.Chem. 301 110351 110351 (2025)
PMID: 40499760 DOI: 10.1016/j.jbc.2025.110351

Abstact

ParMs generally exist on low-copy number plasmids where they contribute to plasmid segregation and stable inheritance. We carried out bioinformatics analysis, which indicated that ParM genes are not only confined to plasmids but are also occasionally found on genomes. Here we report the discovery and characterization of two chromosome-encoded ParMs (cParMs) from the genomes of Desulfitobacterium hafniense (Dh-cParM1) and Clostridium botulinum (Cb-cParM). Both cParMs form filaments, exhibit nucleotide hydrolysis, and possess characteristic ParM subunit structures. Dh-cParM1 forms single and tightly coupled double filaments and is highly conserved on the chromosomes of five of six Desulfitobacterium species. Interestingly, these bacteria have not been reported to harbor plasmids. Cb-cParM possesses unique properties. Its filaments were stable after nucleotide hydrolysis and Pi release, and its ParR (Cb-cParR) did not affect the initial phase of Cb-cParM polymerization but displayed properties of a depolymerization factor for mature filaments. These results indicate functional, polymerizing ParMs can be encoded on genomes, suggesting that ParM roles may extend to other functions beyond plasmid segregation.

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