8X1B image
Deposition Date 2023-11-06
Release Date 2024-11-13
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8X1B
Keywords:
Title:
Cryo-EM structure of FpGalactosaminidase from Flavonifractor plautii in apo state
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.59 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-galactosidase
Mutations:P566L
Chain IDs:A
Chain Length:658
Number of Molecules:1
Biological Source:Flavonifractor plautii
Ligand Molecules
Primary Citation
Structural basis of FpGalNase and its combination with FpGalNAcDeAc for efficient A-to-O blood group conversion.
Exp Hematol Oncol 14 7 7 (2025)
PMID: 39856738 DOI: 10.1186/s40164-025-00599-7

Abstact

Transfusion safety and blood typing continue to present significant challenges in clinical practice, including risks of incorrect blood transfusions and blood shortages. One promising solution is the enzymatic conversion of all red blood cell (RBC) types into universal O-type RBCs. However, the major obstacle to this strategy is the relatively low catalytic efficiency of the enzymes involved. In this study, we investigated two enzymes from Flavonifractor plautii, N-acetylgalactosamine deacetylase (FpGalNAcDeAc) and galactosaminidase (FpGalNase), which demonstrate synergistic activity in efficiently converting A-type RBCs to O-type. We optimized treatment conditions, achieving over 99% conversion in just five minutes using phosphate buffer saline and a 16 nM enzyme concentration. Additionally, we engineered two fusion proteins, FpGalNAcDeAc-FpGalNase and FpGalNase-FpGalNAcDeAc, which showed a 28-fold increase in catalytic efficiency compared to the enzyme mixture. Using cryo-electron microscopy, we resolved the full-length structure of FpGalNase, identifying critical active site residues involved in its catalytic mechanism. This study provides essential structural and biochemical insights for clinical applications in blood group conversion, offering a promising approach for producing universal O-type RBCs.

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Primary Citation of related structures