8WZ7 image
Entry Detail
PDB ID:
8WZ7
Keywords:
Title:
The crystal structure of Legionella pneumophila adenosylhomocysteinase Lpg2021(I255A,T287A) in ternary complex with NAD and adenosine
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-11-01
Release Date:
2024-11-06
Method Details:
Experimental Method:
Resolution:
1.92 Å
R-Value Free:
0.22
R-Value Work:
0.20
Space Group:
P 62 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Adenosylhomocysteinase
Mutations:I255A,T287A
Chain IDs:A
Chain Length:437
Number of Molecules:1
Biological Source:Legionella pneumophila
Primary Citation
Structural basis for substrate recognition by a S-adenosylhomocysteine hydrolase Lpg2021 from Legionella pneumophila.
Int.J.Biol.Macromol. 270 132289 132289 (2024)
PMID: 38735607 DOI: 10.1016/j.ijbiomac.2024.132289

Abstact

S-Adenosyl-l-homocysteine hydrolase (SAHH) is a crucial enzyme that governs S-adenosyl methionine (SAM)-dependent methylation reactions within cells and regulates the intracellular concentration of SAH. Legionella pneumophila, the causative pathogen of Legionnaires' disease, encodes Lpg2021, which is the first identified dimeric SAHH in bacteria and is a promising target for drug development. Here, we report the structure of Lpg2021 in its ligand-free state and in complexes with adenine (ADE), adenosine (ADO), and 3-Deazaneplanocin A (DZNep). X-ray crystallography, isothermal titration calorimetry (ITC), and molecular docking were used to elucidate the binding mechanisms of Lpg2021 to its substrates and inhibitors. Virtual screening was performed to identify potential Lpg2021 inhibitors. This study contributes a novel perspective to the understanding of SAHH evolution and establishes a structural framework for designing specific inhibitors targeting pathogenic Legionella pneumophila SAHH.

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