8WX0 image
Deposition Date 2023-10-27
Release Date 2024-07-03
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8WX0
Keywords:
Title:
PNPase of M.tuberculosis with its RNA substrate
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bifunctional guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase
Chain IDs:A, B, C
Chain Length:773
Number of Molecules:3
Biological Source:Mycobacterium tuberculosis
Polymer Type:polyribonucleotide
Molecule:RNA (24-mer)
Chain IDs:D (auth: E)
Chain Length:24
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Molecule:RNA (24-mer)
Chain IDs:E (auth: F), F (auth: G), G (auth: D)
Chain Length:24
Number of Molecules:3
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Cryo-EM structures of Mycobacterium tuberculosis polynucleotide phosphorylase suggest a potential mechanism for its RNA substrate degradation.
Arch.Biochem.Biophys. 754 109917 109917 (2024)
PMID: 38395123 DOI: 10.1016/j.abb.2024.109917

Abstact

As one of the oldest infectious diseases in the world, tuberculosis (TB) is the second most deadly infectious disease after COVID-19. Tuberculosis is caused by Mycobacterium tuberculosis (Mtb), which can attack various organs of the human body. Up to now, drug-resistant TB continues to be a public health threat. Pyrazinamide (PZA) is regarded as a sterilizing drug in the treatment of TB due to its distinct ability to target Mtb persisters. Previously we demonstrated that a D67N mutation in Mycobacterium tuberculosis polynucleotide phosphorylase (MtbPNPase, Rv2783c) confers resistance to PZA and Rv2783c is a potential target for PZA, but the mechanism leading to PZA resistance remains unclear. To gain further insight into the MtbPNPase, we determined the cryo-EM structures of apo Rv2783c, its mutant form and its complex with RNA. Our studies revealed the Rv2783c structure at atomic resolution and identified its enzymatic functional groups essential for its phosphorylase activities. We also investigated the molecular mechanisms underlying the resistance to PZA conferred by the mutation. Our research findings provide structural and functional insights enabling the development of new anti-tuberculosis drugs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures