8WVB image
Deposition Date 2023-10-23
Release Date 2023-12-13
Last Version Date 2023-12-27
Entry Detail
PDB ID:
8WVB
Keywords:
Title:
Crystal structure of Lsd18 mutant S195M
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative epoxidase LasC
Gene (Uniprot):lsd18
Mutations:S195M
Chain IDs:A, B
Chain Length:488
Number of Molecules:2
Biological Source:Streptomyces lasalocidi
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ELY A LYS modified residue
Primary Citation
Simultaneous Improvement in the Thermostability and Catalytic Activity of Epoxidase Lsd18 for the Synthesis of Lasalocid A.
Int J Mol Sci 24 ? ? (2023)
PMID: 38069118 DOI: 10.3390/ijms242316795

Abstact

Enzymes used in the synthesis of natural products are potent catalysts, capable of efficient and stereoselective chemical transformations. Lsd18 catalyzes two sequential epoxidations during the biosynthesis of lasalocid A, a polyether polyketide natural product. We performed protein engineering on Lsd18 to improve its thermostability and catalytic activity. Utilizing structure-guided methods of FoldX and Rosetta-ddG, we designed 15 mutants of Lsd18. Screening of these mutants using thermal shift assay identified stabilized variants Lsd18-T189M, Lsd18-S195M, and the double mutant Lsd18-T189M-S195M. Trypsin digestion, molecular dynamic simulation, circular dichroism (CD) spectroscopy, and X-ray crystallography provided insights into the molecular basis for the improved enzyme properties. Notably, enhanced hydrophobic interaction within the enzyme core and interaction of the protein with the FAD cofactor appear to be responsible for its better thermostability.

Legend

Protein

Chemical

Disease

Primary Citation of related structures