8WV1 image
Entry Detail
PDB ID:
8WV1
Keywords:
RIBOSOME
Title:
Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
Biological Source:
Source Organism:
Thermus thermophilus HB8
PDB Version:
Deposition Date:
2023-10-22
Release Date:
2024-11-06
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.99 Å
R-Value Free:
0.36
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 41
8WV1 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:AA (auth: 0), FB (auth: 5)
Chain Length:60
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P80339 Pfam ID:PF01783
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:BA (auth: 13), GB (auth: 6)
Chain Length:54
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P35871 Pfam ID:PF00471
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:CA (auth: 2), HB (auth: 7)
Chain Length:49
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P80340 Pfam ID:PF00468
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:DA (auth: 3), IB (auth: 8)
Chain Length:65
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SKU1 Pfam ID:PF01632
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:EA (auth: 4), JB (auth: 9)
Chain Length:37
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHR2 Pfam ID:PF00444
Polymer Type:polyribonucleotide
Description:23S rRNA
Chain IDs:A, FA (auth: a)
Chain Length:2915
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
Polymer Type:polyribonucleotide
Description:5S rRNA
Chain IDs:B, GA (auth: b)
Chain Length:122
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:C, HA (auth: c)
Chain Length:276
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P60405 Pfam ID:PF00181, PF03947
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:D, IA (auth: d)
Chain Length:206
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHN8 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:E, JA (auth: e)
Chain Length:210
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHN9 Pfam ID:PF00573
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:F, KA (auth: f)
Chain Length:182
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHQ0 Pfam ID:PF00281, PF00673
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:G, LA (auth: g)
Chain Length:180
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P0DOY8 Pfam ID:PF00347
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein bL9
Chain IDs:H, MA (auth: h)
Chain Length:148
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SLQ1
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:I, NA (auth: i)
Chain Length:140
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P60488 Pfam ID:PF00572
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL14
Chain IDs:J, OA (auth: j)
Chain Length:122
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHP8 Pfam ID:PF00238
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:K, PA (auth: k)
Chain Length:150
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHQ7 Pfam ID:PF00828
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:L, QA (auth: l)
Chain Length:141
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P60489 Pfam ID:PF00252
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:M, RA (auth: m)
Chain Length:118
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q9Z9H5 Pfam ID:PF01196
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:N, SA (auth: n)
Chain Length:112
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHQ4 Pfam ID:PF00861
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:O, TA (auth: o)
Chain Length:146
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P60490 Pfam ID:PF01245
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:P, UA (auth: p)
Chain Length:118
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P60491 Pfam ID:PF00453
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:Q, VA (auth: q)
Chain Length:101
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P60492 Pfam ID:PF00829
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:R, WA (auth: r)
Chain Length:113
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHP3 Pfam ID:PF00237
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:S, XA (auth: s)
Chain Length:96
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHP0 Pfam ID:PF00276
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL24
Chain IDs:T, YA (auth: t)
Chain Length:107
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHP9
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:U, ZA (auth: u)
Chain Length:206
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHZ1 Pfam ID:PF01386, PF14693
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein bL27
Chain IDs:V, AB (auth: v)
Chain Length:78
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P60493
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein bL28
Chain IDs:W, BB (auth: w)
Chain Length:98
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:P60494
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL29
Chain IDs:X, CB (auth: x)
Chain Length:72
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHP6
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:Y, DB (auth: y)
Chain Length:60
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SHQ6 Pfam ID:PF00327
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L31
Chain IDs:Z, EB (auth: z)
Chain Length:71
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
UniProt ID:Q5SJE1 Pfam ID:PF01197
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
2MA A A modified residue
2MU A U modified residue
4OC A C modified residue
5MC A C modified residue
5MU A U modified residue
PSU A U modified residue
Ligand Molecules
MG
ZN
Primary Citation
Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
To Be Published ? ? ? (?)
Primary Citation of related structures
8WV1