8WTE image
Deposition Date 2023-10-18
Release Date 2024-05-01
Last Version Date 2024-10-09
Entry Detail
PDB ID:
8WTE
Keywords:
Title:
Crystal structure of TCR in complex with HLA-A*11:01 bound to KRAS-G12V peptide (VVGAVGVGK)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.17 Å
R-Value Free:
0.21
R-Value Work:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T-cell receptor alpha chain
Mutations:T159C
Chain IDs:A, F (auth: C)
Chain Length:198
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:T-cell receptor beta chain
Mutations:S170C
Chain IDs:B, G (auth: D)
Chain Length:239
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:MHC class I antigen (Fragment)
Chain IDs:C (auth: H), H (auth: E)
Chain Length:275
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:D (auth: I), I (auth: F)
Chain Length:99
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:KRAS-G12V nonamer peptide
Mutations:S170C
Chain IDs:E (auth: J), J (auth: G)
Chain Length:9
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Identification and affinity enhancement of T-cell receptor targeting a KRAS G12V cancer neoantigen.
Commun Biol 7 512 512 (2024)
PMID: 38684865 DOI: 10.1038/s42003-024-06209-2

Abstact

Neoantigens derived from somatic mutations in Kirsten Rat Sarcoma Viral Oncogene Homolog (KRAS), the most frequently mutated oncogene, represent promising targets for cancer immunotherapy. Recent research highlights the potential role of human leukocyte antigen (HLA) allele A*11:01 in presenting these altered KRAS variants to the immune system. In this study, we successfully generate and identify murine T-cell receptors (TCRs) that specifically recognize KRAS8-16G12V from three predicted high affinity peptides. By determining the structure of the tumor-specific 4TCR2 bound to KRASG12V-HLA-A*11:01, we conduct structure-based design to create and evaluate TCR variants with markedly enhanced affinity, up to 15.8-fold. This high-affinity TCR mutant, which involved only two amino acid substitutions, display minimal conformational alterations while maintaining a high degree of specificity for the KRASG12V peptide. Our research unveils the molecular mechanisms governing TCR recognition towards KRASG12V neoantigen and yields a range of affinity-enhanced TCR mutants with significant potential for immunotherapy strategies targeting tumors harboring the KRASG12V mutation.

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Primary Citation of related structures