8WT1 image
Entry Detail
PDB ID:
8WT1
Keywords:
Title:
Crystal structure of S9 carboxypeptidase from Geobacillus sterothermophilus
Biological Source:
PDB Version:
Deposition Date:
2023-10-17
Release Date:
2024-03-13
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:S9 family peptidase
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:691
Number of Molecules:8
Biological Source:Geobacillus stearothermophilus ATCC 12980
Primary Citation
Crystal structure and solution scattering of Geobacillus stearothermophilus S9 peptidase reveal structural adaptations for carboxypeptidase activity.
Febs Lett. 598 684 701 (2024)
PMID: 38426217 DOI: 10.1002/1873-3468.14834

Abstact

Acylaminoacyl peptidases (AAPs) play a pivotal role in various pathological conditions and are recognized as potential therapeutic targets. AAPs exhibit a wide range of activities, such as acylated amino acid-dependent aminopeptidase, endopeptidase, and less studied carboxypeptidase activity. We have determined the crystal structure of an AAP from Geobacillus stearothermophilus (S9gs) at 2.0 Å resolution. Despite being annotated as an aminopeptidase in the NCBI database, our enzymatic characterization proved S9gs to be a carboxypeptidase. Solution-scattering studies showed that S9gs exists as a tetramer in solution, and crystal structure analysis revealed adaptations responsible for the carboxypeptidase activity of S9gs. The findings present a hypothesis for substrate selection, substrate entry, and product exit from the active site, enriching our understanding of this rare carboxypeptidase.

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