8WPY image
Deposition Date 2023-10-10
Release Date 2024-10-16
Last Version Date 2025-10-29
Entry Detail
PDB ID:
8WPY
Keywords:
IMMUNE SYSTEM/VIRAL PROTEIN
Title:
Cryo-EM structure of SARS-CoV-2 receptor-binding domain (RBD) complexed with CB6 mutant,S309, and S304 antibodies
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.02 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8WPY validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:S309 fab heavy chain
Chain IDs:A
Chain Length:239
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:S309 fab light chain
Chain IDs:B
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CB6 fab mutant heavy chain
Chain IDs:C
Chain Length:231
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CB6 fab mutant light chain
Chain IDs:D
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:S304 fab heavy chain
Chain IDs:E (auth: H)
Chain Length:232
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:S304 fab light chain
Chain IDs:F (auth: L)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:G (auth: R)
Chain Length:229
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF09408
Ligand Molecules
NA
Primary Citation
Enabling the immune escaped etesevimab fully-armed against SARS-CoV-2 Omicron subvariants including KP.2
Hlife 3 132 145 (2025)
Primary Citation of related structures
8WPY