8WPF image
Deposition Date 2023-10-10
Release Date 2023-11-29
Last Version Date 2023-12-27
Entry Detail
PDB ID:
8WPF
Keywords:
Title:
Structure of monkeypox virus polymerase complex F8-A22-E4-H5 with exogenous DNA bearing one abasic site
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA polymerase
Chain IDs:A
Chain Length:1006
Number of Molecules:1
Biological Source:Monkeypox virus
Polymer Type:polypeptide(L)
Molecule:A22R DNA polymerase processivity factor
Chain IDs:B
Chain Length:437
Number of Molecules:1
Biological Source:Monkeypox virus
Polymer Type:polypeptide(L)
Molecule:E4R Uracil-DNA glycosylase, DNA polymerase processivity factor
Chain IDs:C
Chain Length:218
Number of Molecules:1
Biological Source:Monkeypox virus
Polymer Type:polypeptide(L)
Molecule:H5R late gene transcription factor
Chain IDs:D, E, F, G
Chain Length:210
Number of Molecules:4
Biological Source:Monkeypox virus
Polymer Type:polydeoxyribonucleotide
Molecule:Primer DNA
Chain IDs:H
Chain Length:35
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:Template DNA
Chain IDs:I
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Structural insights into the assembly and mechanism of mpox virus DNA polymerase complex F8-A22-E4-H5.
Mol.Cell 83 4398 ? (2023)
PMID: 37995690 DOI: 10.1016/j.molcel.2023.10.038

Abstact

The DNA replication of mpox virus is performed by the viral polymerase F8 and also requires other viral factors, including processivity factor A22, uracil DNA glycosylase E4, and phosphoprotein H5. However, the molecular roles of these viral factors remain unclear. Here, we characterize the structures of F8-A22-E4 and F8-A22-E4-H5 complexes in the presence of different primer-template DNA substrates. E4 is located upstream of F8 on the template single-stranded DNA (ssDNA) and is catalytically active, highlighting a functional coupling between DNA base-excision repair and DNA synthesis. Moreover, H5, in the form of tetramer, binds to the double-stranded DNA (dsDNA) region downstream of F8 in a similar position as PCNA (proliferating cell nuclear antigen) does in eukaryotic polymerase complexes. Omission of H5 or disruption of its DNA interaction showed a reduced synthesis of full-length DNA products. These structures provide snapshots for the working cycle of the polymerase and generate insights into the mechanisms of these essential factors in viral DNA replication.

Legend

Protein

Chemical

Disease

Primary Citation of related structures