8WKU image
Deposition Date 2023-09-28
Release Date 2024-06-26
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8WKU
Title:
Complex structure of MjHKU4r-CoV-1 spike RBD bound to human CD26
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Manis javanica (Taxon ID: 9974)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dipeptidyl peptidase 4 soluble form
Gene (Uniprot):DPP4
Chain IDs:A
Chain Length:734
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:MjHKU4r-CoV-1 spike RBD
Chain IDs:B
Chain Length:246
Number of Molecules:1
Biological Source:Manis javanica
Ligand Molecules
Primary Citation
Molecular basis for receptor recognition and broad host tropism for merbecovirus MjHKU4r-CoV-1.
Embo Rep. 25 3116 3136 (2024)
PMID: 38877169 DOI: 10.1038/s44319-024-00169-8

Abstact

A novel pangolin-origin MERS-like coronavirus (CoV), MjHKU4r-CoV-1, was recently identified. It is closely related to bat HKU4-CoV, and is infectious in human organs and transgenic mice. MjHKU4r-CoV-1 uses the dipeptidyl peptidase 4 (DPP4 or CD26) receptor for virus entry and has a broad host tropism. However, the molecular mechanism of its receptor binding and determinants of host range are not yet clear. Herein, we determine the structure of the MjHKU4r-CoV-1 spike (S) protein receptor-binding domain (RBD) complexed with human CD26 (hCD26) to reveal the basis for its receptor binding. Measuring binding capacity toward multiple animal receptors for MjHKU4r-CoV-1, mutagenesis analyses, and homology modeling highlight that residue sites 291, 292, 294, 295, 336, and 344 of CD26 are the crucial host range determinants for MjHKU4r-CoV-1. These results broaden our understanding of this potentially high-risk virus and will help us prepare for possible outbreaks in the future.

Legend

Protein

Chemical

Disease

Primary Citation of related structures