8WDA image
Entry Detail
PDB ID:
8WDA
EMDB ID:
EMD-37459
Keywords:
MEMBRANE PROTEIN
Title:
Cryo-EM structure of the substrate-bound DppABCD complex
Biological Source:
Source Organism:
Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv), Mycolicibacterium smegmatis MC2 155
Host Organism:
Mycolicibacterium smegmatis MC2 155
PDB Version:
Deposition Date:
2023-09-14
Release Date:
2024-09-18
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.26 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8WDA validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Probable periplasmic dipeptide-binding lipoprotein DppA
Chain IDs:A
Chain Length:517
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
UniProt ID:I6X811 Pfam ID:PF00496
Protein Blast
Polymer Type:polypeptide(L)
Description:Probable dipeptide-transport integral membrane protein ABC transporter DppB
Chain IDs:B
Chain Length:308
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
UniProt ID:I6YGV9 Pfam ID:PF19300, PF00528
Protein Blast
Polymer Type:polypeptide(L)
Description:Probable dipeptide-transport integral membrane protein ABC transporter DppC
Chain IDs:C
Chain Length:287
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
UniProt ID:L0TEV4 Pfam ID:PF00528
Protein Blast
Polymer Type:polypeptide(L)
Description:Probable dipeptide-transport ATP-binding protein ABC transporter DppD
Chain IDs:E (auth: D)
Chain Length:548
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
UniProt ID:I6Y482 Pfam ID:PF00005, PF08352
Polymer Type:polypeptide(L)
Description:tetrapeptide
Chain IDs:D (auth: E)
Chain Length:4
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis MC2 155
Ligand Molecules
9XX
PLM
Primary Citation
Cryo-EM structure of the substrate-bound DppABCD complex
To Be Published ? ? ? (?)
Primary Citation of related structures
8WDA