ISDA: 8WDA

Deposition Date 2023-09-14

Release Date 2024-09-18

Last Version Date 2025-07-23

Entry Detail

PDB ID:

8WDA

Keywords:

MEMBRANE PROTEIN

Title:

Cryo-EM structure of the substrate-bound DppABCD complex

Biological Source:

Source Organism:

Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (Taxon ID: 83332)
Mycolicibacterium smegmatis MC2 155 (Taxon ID: 246196)

Host Organism:

Mycolicibacterium smegmatis MC2 155

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.26 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Probable periplasmic dipeptide-binding lipoprotein DppA
Gene (Uniprot):dppA
Chain IDs:A
Chain Length:517
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

UniProt ID:I6X811 Pfam ID:PF00496

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Probable dipeptide-transport integral membrane protein ABC transporter DppB
Gene (Uniprot):dppB
Chain IDs:B
Chain Length:308
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

UniProt ID:I6YGV9 Pfam ID:PF19300, PF00528

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Probable dipeptide-transport integral membrane protein ABC transporter DppC
Gene (Uniprot):dppC
Chain IDs:C
Chain Length:287
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

UniProt ID:L0TEV4 Pfam ID:PF00528

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Probable dipeptide-transport ATP-binding protein ABC transporter DppD
Gene (Uniprot):dppD
Chain IDs:E (auth: D)
Chain Length:548
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

UniProt ID:I6Y482 Pfam ID:PF00005, PF08352

Polymer Type:polypeptide(L)
Molecule:tetrapeptide
Chain IDs:D (auth: E)
Chain Length:4
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis MC2 155

Ligand Molecules

9XX

PLM

Primary Citation

Cryo-EM structure of the substrate-bound DppABCD complex

Hu, T, Zhang, B, Rao, Z.Show

To Be Published ? ? ? (?)

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