8WCN image
Entry Detail
PDB ID:
8WCN
EMDB ID:
Title:
Cryo-EM structure of PAO1-ImcA with GMPCPP
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-09-13
Release Date:
2024-03-13
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Diguanylate cyclase
Chain IDs:A, B
Chain Length:461
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa
Primary Citation
A c-di-GMP signaling module controls responses to iron in Pseudomonas aeruginosa.
Nat Commun 15 1860 1860 (2024)
PMID: 38424057 DOI: 10.1038/s41467-024-46149-3

Abstact

Cyclic dimeric guanosine monophosphate (c-di-GMP) serves as a bacterial second messenger that modulates various processes including biofilm formation, motility, and host-microbe symbiosis. Numerous studies have conducted comprehensive analysis of c-di-GMP. However, the mechanisms by which certain environmental signals such as iron control intracellular c-di-GMP levels are unclear. Here, we show that iron regulates c-di-GMP levels in Pseudomonas aeruginosa by modulating the interaction between an iron-sensing protein, IsmP, and a diguanylate cyclase, ImcA. Binding of iron to the CHASE4 domain of IsmP inhibits the IsmP-ImcA interaction, which leads to increased c-di-GMP synthesis by ImcA, thus promoting biofilm formation and reducing bacterial motility. Structural characterization of the apo-CHASE4 domain and its binding to iron allows us to pinpoint residues defining its specificity. In addition, the cryo-electron microscopy structure of ImcA in complex with a c-di-GMP analog (GMPCPP) suggests a unique conformation in which the compound binds to the catalytic pockets and to the membrane-proximal side located at the cytoplasm. Thus, our results indicate that a CHASE4 domain directly senses iron and modulates the crosstalk between c-di-GMP metabolic enzymes.

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