8WB6 image
Entry Detail
PDB ID:
8WB6
EMDB ID:
Title:
Cryo-EM structure of Snf7 N-terminal domain in outer coils of spiral polymers
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-09-08
Release Date:
2024-05-29
Method Details:
Experimental Method:
Resolution:
7.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SNF7 isoform 1
Chain IDs:A
Chain Length:240
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Three-dimensional architecture of ESCRT-III flat spirals on the membrane.
Proc.Natl.Acad.Sci.USA 121 e2319115121 e2319115121 (2024)
PMID: 38709931 DOI: 10.1073/pnas.2319115121

Abstact

The endosomal sorting complexes required for transport (ESCRTs) are responsible for membrane remodeling in many cellular processes, such as multivesicular body biogenesis, viral budding, and cytokinetic abscission. ESCRT-III, the most abundant ESCRT subunit, assembles into flat spirals as the primed state, essential to initiate membrane invagination. However, the three-dimensional architecture of ESCRT-III flat spirals remained vague for decades due to highly curved filaments with a small diameter and a single preferred orientation on the membrane. Here, we unveiled that yeast Snf7, a component of ESCRT-III, forms flat spirals on the lipid monolayers using cryogenic electron microscopy. We developed a geometry-constrained Euler angle-assigned reconstruction strategy and obtained moderate-resolution structures of Snf7 flat spirals with varying curvatures. Our analyses showed that Snf7 subunits recline on the membrane with N-terminal motifs α0 as anchors, adopt an open state with fused α2/3 helices, and bend α2/3 gradually from the outer to inner parts of flat spirals. In all, we provide the orientation and conformations of ESCRT-III flat spirals on the membrane and unveil the underlying assembly mechanism, which will serve as the initial step in understanding how ESCRTs drive membrane abscission.

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