8WB2 image
Deposition Date 2023-09-08
Release Date 2023-12-27
Last Version Date 2024-01-03
Entry Detail
PDB ID:
8WB2
Keywords:
Title:
Heme-bound Arabidopsis thaliana temperature-induced lipocalin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Temperature-induced lipocalin-1
Gene (Uniprot):TIL
Chain IDs:A
Chain Length:206
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Crystallographic and functional studies of a plant temperature-induced lipocalin.
Biochim Biophys Acta Gen Subj 1868 130540 130540 (2023)
PMID: 38103756 DOI: 10.1016/j.bbagen.2023.130540

Abstact

Arabidopsis thaliana temperature-induced lipocalin (AtTIL) is a prototypical member of plant lipocalins and participates in a variety of cellular processes, particularly stress responses. Bioinformatical and physiological studies have proposed its promiscuous ligand-binding ability, but the molecular basis is yet unclear. Here, we report the 1.9-Å crystal structure of AtTIL in complex with heme. Spectrophotometric absorbance titration with heme yields a dissociation constant of ∼2 micromolar, indicating the relatively weak interaction between AtTIL and heme, which is confirmed by the AtTIL-heme structure. Although binding to retinal or biliverdin is not detected, such possibility can not be precluded as suggested by comparison with other lipocalin structures. These results show that AtTIL is a structural and functional homolog of the bacterial lipocalin Blc.

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Primary Citation of related structures