8W5E image
Entry Detail
PDB ID:
8W5E
EMDB ID:
Keywords:
Title:
Cryo-EM structure of Qb-Ab4
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-08-26
Release Date:
2025-02-26
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Heavy chain of Ab4
Chain IDs:A (auth: H)
Chain Length:124
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Light chain of Ab4
Chain IDs:D (auth: L)
Chain Length:110
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Minor capsid protein A1
Chain IDs:B (auth: c), C
Chain Length:133
Number of Molecules:2
Biological Source:Escherichia phage Qbeta
Ligand Molecules
Primary Citation
Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep 44 115334 115334 (2025)
PMID: 39955776 DOI: 10.1016/j.celrep.2025.115334

Abstact

The germinal center (GC) sets an environment where antigen-specific B cells are compelled to continuously increase their affinity to compete for the antigen and obtain Tfh help for survival and propagation. Previous studies indicated that low-affinity B cells are disadvantaged in the presence of high-affinity ones, suggesting that competition may lead to the elimination of low-affinity B cells and their descendants. However, using a multivalent virus-mimicking antigen, our study demonstrates that low-affinity B cells not only successfully participate in GC responses alongside high-affinity B cells but also undergo accelerated affinity maturation under the more stringent competition. Furthermore, our cryo-electron-microscopy-based structural analysis reveals that both low-affinity and high-affinity B cells compete for the same antigenic epitope. Although the applicability of this idealized GC competition to true pathogen-induced responses remains uncertain, this change in perspective on the role of competition in low-affinity B cell evolution provides valuable insights for vaccine development.

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Primary Citation of related structures