8W5B image
Entry Detail
PDB ID:
8W5B
Keywords:
Title:
Crystal Structure of the shaft pilin LrpA from Ligilactobacillus ruminis
Biological Source:
PDB Version:
Deposition Date:
2023-08-26
Release Date:
2024-07-10
Method Details:
Experimental Method:
Resolution:
2.27 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:LPXTG-motif cell wall anchor domain protein
Chain IDs:A
Chain Length:455
Number of Molecules:1
Biological Source:Ligilactobacillus ruminis ATCC 25644
Ligand Molecules
Primary Citation
The crystal structure of the N-terminal domain of the backbone pilin LrpA reveals a new closure-and-twist motion for assembling dynamic pili in Ligilactobacillus ruminis.
Acta Crystallogr D Struct Biol 80 474 492 (2024)
PMID: 38935340 DOI: 10.1107/S2059798324005114

Abstact

Sortase-dependent pili are long surface appendages that mediate attachment, colonization and biofilm formation in certain genera and species of Gram-positive bacteria. Ligilactobacillus ruminis is an autochthonous gut commensal that relies on sortase-dependent LrpCBA pili for host adherence and persistence. X-ray crystal structure snapshots of the backbone pilin LrpA were captured in two atypical bent conformations leading to a zigzag morphology in the LrpCBA pilus structure. Small-angle X-ray scattering and structural analysis revealed that LrpA also adopts the typical linear conformation, resulting in an elongated pilus morphology. Various conformational analyses and biophysical experiments helped to demonstrate that a hinge region located at the end of the flexible N-terminal domain of LrpA facilitates a new closure-and-twist motion for assembling dynamic pili during the assembly process and host attachment. Further, the incongruent combination of flexible domain-driven conformational dynamics and rigid isopeptide bond-driven stability observed in the LrpCBA pilus might also extend to the sortase-dependent pili of other bacteria colonizing a host.

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Primary Citation of related structures