8W3R image
Entry Detail
PDB ID:
8W3R
Keywords:
Title:
Crystal structure of prefusion-stabilized RSV F protein UFCR2-iSS-P2-NQ in complex with A4 single-chain fragment variable
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-02-22
Release Date:
2025-01-15
Method Details:
Experimental Method:
Resolution:
4.02 Å
R-Value Free:
0.30
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:A4 single-chain fragment variable
Chain IDs:A
Chain Length:272
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:prefusion-stabilized RSV F protein UFCR2-iSS-P2-NQ
Chain IDs:B (auth: F)
Chain Length:507
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Rational design of uncleaved prefusion-closed trimer vaccines for human respiratory syncytial virus and metapneumovirus.
Nat Commun 15 9939 9939 (2024)
PMID: 39550381 DOI: 10.1038/s41467-024-54287-x

Abstact

Respiratory syncytial virus (RSV) and human metapneumovirus (hMPV) cause human respiratory diseases and are major targets for vaccine development. In this study, we design uncleaved prefusion-closed (UFC) trimers for the fusion protein (F) of both viruses by examining mutations critical to F metastability. For RSV, we assess four previous prefusion F designs, including the first and second generations of DS-Cav1, SC-TM, and 847A. We then identify key mutations that can maintain prefusion F in a native-like, closed trimeric form (up to 76%) without introducing any interprotomer disulfide bond. For hMPV, we develop a stable UFC trimer with a truncated F2-F1 linkage and an interprotomer disulfide bond. Dozens of UFC constructs are characterized by negative-stain electron microscopy (nsEM), x-ray crystallography (11 RSV-F structures and one hMPV-F structure), and antigenic profiling. Using an optimized RSV-F UFC trimer as bait, we identify three potent RSV neutralizing antibodies (NAbs) from a phage-displayed human antibody library, with a public NAb lineage targeting sites Ø and V and two cross-pneumovirus NAbs recognizing site III. In mouse immunization, rationally designed RSV-F and hMPV-F UFC trimers induce robust antibody responses with high neutralizing titers. Our study provides a foundation for future prefusion F-based RSV and hMPV vaccine development.

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Primary Citation of related structures