8W33 image
Deposition Date 2024-02-21
Release Date 2024-07-03
Last Version Date 2024-08-28
Entry Detail
PDB ID:
8W33
Title:
Structure of McrD (methyl-coenzyme M reductase operon protein D) from Methanomassiliicoccus luminyensis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.19
R-Value Work:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:McrD (methyl-coenzyme M reductase operon protein D)
Chain IDs:A, B
Chain Length:172
Number of Molecules:2
Biological Source:Methanomassiliicoccus luminyensis B10
Ligand Molecules
Primary Citation
The crystal structure of methanogen McrD, a methyl-coenzyme M reductase-associated protein.
Febs Open Bio 14 1222 1229 (2024)
PMID: 38877345 DOI: 10.1002/2211-5463.13848

Abstact

Methyl-coenzyme M reductase (MCR) is a multi-subunit (α2β2γ2) enzyme responsible for methane formation via its unique F430 cofactor. The genes responsible for producing MCR (mcrA, mcrB and mcrG) are typically colocated with two other highly conserved genes mcrC and mcrD. We present here the high-resolution crystal structure for McrD from a human gut methanogen Methanomassiliicoccus luminyensis strain B10. The structure reveals that McrD comprises a ferredoxin-like domain assembled into an α + β barrel-like dimer with conformational flexibility exhibited by a functional loop. The description of the M. luminyensis McrD crystal structure contributes to our understanding of this key conserved methanogen protein typically responsible for promoting MCR activity and the production of methane, a greenhouse gas.

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Primary Citation of related structures