8W30 image
Deposition Date 2024-02-21
Release Date 2025-01-01
Last Version Date 2025-01-01
Entry Detail
PDB ID:
8W30
Keywords:
Title:
Crystal structure of alpha-V beta-1 integrin headpiece in complex with TR01225179
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.27
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Integrin alpha-V heavy chain
Gene (Uniprot):ITGAV
Chain IDs:A
Chain Length:605
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Integrin beta-1
Gene (Uniprot):ITGB1
Chain IDs:B
Chain Length:456
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation

Abstact

Selective inhibition of the RGD (Arg-Gly-Asp) integrin αvβ1 has been recently identified as an attractive therapeutic approach for the treatment of liver fibrosis given its function, target expression, and safety profile. Our identification of a non-RGD small molecule lead followed by focused, systematic changes to the core structure utilizing a crystal structure, in silico modeling, and a tractable synthetic approach resulted in the identification of a potent small molecule exhibiting a remarkable affinity for αvβ1 relative to several other integrin isoforms measured. Azabenzimidazolone 25 demonstrated antifibrotic efficacy in an in vivo rat liver fibrosis model and represents a tool compound capable of further exploring the biological consequences of selective αvβ1 inhibition.

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Primary Citation of related structures