8VYC image
Entry Detail
PDB ID:
8VYC
Title:
Graspetide pre-fuscimiditide A1C/T3C variant
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-02-08
Release Date:
2024-05-08
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP-grasp target RiPP
Mutations:A1C, T3C
Chain IDs:A
Chain Length:22
Number of Molecules:1
Biological Source:Thermobifida fusca YX
Ligand Molecules
Primary Citation
Cyclic Peptides from Graspetide Biosynthesis and Native Chemical Ligation.
J.Am.Chem.Soc. 146 11605 11609 (2024)
PMID: 38634647 DOI: 10.1021/jacs.4c02745

Abstact

The ribosomally synthesized and post-translationally modified peptide (RiPP) superfamily of natural products includes many examples of cyclic peptides with diverse macrocyclization chemistries. The graspetides, one family of macrocyclized RiPPs, harbor side chain-side chain ester or amide linkages. We recently reported the structure and biosynthesis of the graspetide pre-fuscimiditide, a 22-amino-acid (aa) peptide with two ester cross-links forming a stem-loop structure. These cross-links are introduced by a single graspetide synthetase, the ATP-grasp enzyme ThfB. Here we show that ThfB can also catalyze the formation of amide or thioester cross-links in prefuscimiditide, with thioester formation being especially efficient. We further show that upon proteolysis to reveal an N-terminal cysteine residue, the thioester-linked peptide rapidly and quantitatively rearranges via native chemical ligation into an isopeptide-bonded head-to-tail cyclic peptide. The solution structure of this rearranged peptide was determined by using 2D NMR spectroscopy experiments. Our methodology offers a straightforward recombinant route to head-to-tail cyclic peptides.

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Primary Citation of related structures