8VXQ image
Entry Detail
PDB ID:
8VXQ
EMDB ID:
Keywords:
Title:
Cryo-EM structure of phage DEV ejection proteins gp72:gp73
Biological Source:
PDB Version:
Deposition Date:
2024-02-05
Release Date:
2024-04-03
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:N4 gp52-like protein
Chain IDs:J (auth: A), K (auth: B), L (auth: C), M (auth: D), N (auth: E), O (auth: F), P (auth: G), Q (auth: H), R (auth: I)
Chain Length:155
Number of Molecules:9
Biological Source:Pseudomonas phage vB_PaeP_DEV
Polymer Type:polypeptide(L)
Description:gp72
Chain IDs:A (auth: R), B (auth: J), C (auth: K), D (auth: L), E (auth: M), F (auth: N), G (auth: O), H (auth: P), I (auth: Q)
Chain Length:521
Number of Molecules:9
Biological Source:Pseudomonas phage vB_PaeP_DEV
Ligand Molecules
Primary Citation
Integrative structural analysis of Pseudomonas phage DEV reveals a genome ejection motor.
Nat Commun 15 8482 8482 (2024)
PMID: 39353939 DOI: 10.1038/s41467-024-52752-1

Abstact

DEV is an obligatory lytic Pseudomonas phage of the N4-like genus, recently reclassified as Schitoviridae. The DEV genome encodes 91 ORFs, including a 3398 amino acid virion-associated RNA polymerase (vRNAP). Here, we describe the complete architecture of DEV, determined using a combination of cryo-electron microscopy localized reconstruction, biochemical methods, and genetic knockouts. We built de novo structures of all capsid factors and tail components involved in host attachment. We demonstrate that DEV long tail fibers are essential for infection of Pseudomonas aeruginosa but dispensable for infecting mutants with a truncated lipopolysaccharide devoid of the O-antigen. We determine that DEV vRNAP is part of a three-gene operon conserved in 191 Schitoviridae genomes. We propose these three proteins are ejected into the host to form a genome ejection motor spanning the cell envelope. We posit that the design principles of the DEV ejection apparatus are conserved in all Schitoviridae.

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