ISDA

Deposition Date 2024-02-01

Release Date 2024-11-06

Last Version Date 2024-11-27

Entry Detail

PDB ID:

8VWI

Keywords:

VIRAL PROTEIN

Title:

The base complex of the AcMNPV baculovirus nucleocapsid (Class 1, localised reconstruction)

Biological Source:

Source Organism:

Autographa californica multiple nucleopolyhedrovirus (Taxon ID: 307456)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.71 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):P39
Chain IDs:A, B, C, D, E, F, U (auth: V), V (auth: W), W (auth: X), X (auth: Y), Y (auth: Z), Z (auth: a)
Chain Length:347
Number of Molecules:12
Biological Source:Autographa californica multiple nucleopolyhedrovirus

UniProt ID:P17499 Pfam ID:PF04501

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Capsid-associated protein VP80
Gene (Uniprot):VP80
Chain IDs:G, H, I, AA (auth: b), BA (auth: c), CA (auth: d)
Chain Length:691
Number of Molecules:6
Biological Source:Autographa californica multiple nucleopolyhedrovirus

UniProt ID:Q00733 Pfam ID:PF07267

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Occlusion-derived virus envelope protein E27
Gene (Uniprot):E27
Chain IDs:J, M, Q, S, DA (auth: e), GA (auth: h)
Chain Length:347
Number of Molecules:6
Biological Source:Autographa californica multiple nucleopolyhedrovirus

UniProt ID:P41702 Pfam ID:PF05314

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein C42
Gene (Uniprot):ORF101
Chain IDs:K, L, R, T, EA (auth: f), FA (auth: g)
Chain Length:361
Number of Molecules:6
Biological Source:Autographa californica multiple nucleopolyhedrovirus

UniProt ID:P25695 Pfam ID:PF05815

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein AC109
Gene (Uniprot):ORF109
Chain IDs:N, HA (auth: i)
Chain Length:691
Number of Molecules:2
Biological Source:Autographa californica multiple nucleopolyhedrovirus

UniProt ID:P41662 Pfam ID:PF05054

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein AC142
Gene (Uniprot):ORF142
Chain IDs:O, IA (auth: j)
Chain Length:290
Number of Molecules:2
Biological Source:Autographa californica multiple nucleopolyhedrovirus

UniProt ID:P41700 Pfam ID:PF04913

Protein Blast

Polymer Type:polypeptide(L)
Molecule:38K (AC98) protein in P143-LEF5 intergenic region
Chain IDs:P, JA (auth: k)
Chain Length:320
Number of Molecules:2
Biological Source:Autographa californica multiple nucleopolyhedrovirus

UniProt ID:P24745 Pfam ID:PF05152

Ligand Molecules

Primary Citation

The baculovirus structure defines the hallmarks of a new viral realm

Johnstone, B.A, Hardy, J.M, Ha, J, Butkovic, A, Koszalka, P, Accurso, C, Venugopal, H, de Marco, A, Krupovic, M, Coulibaly, F.Show

To Be Published ? ? ? (?)

Primary Citation of related structures