8VVS image
Deposition Date 2024-01-31
Release Date 2025-07-30
Last Version Date 2025-07-30
Entry Detail
PDB ID:
8VVS
Title:
Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes
Biological Source:
Source Organism:
Lampyridae (Taxon ID: 7049)
Oryctolagus cuniculus (Taxon ID: 9986)
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL2
Gene (Uniprot):RPL8
Chain IDs:A
Chain Length:257
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L29
Gene (Uniprot):RPL29
Chain IDs:AA
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RPSA
Gene (Uniprot):RPSA
Chain IDs:ZA (auth: AB)
Chain Length:295
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S26
Gene (Uniprot):RPS26
Chain IDs:ZB (auth: AC)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL3
Gene (Uniprot):RPL3
Chain IDs:B
Chain Length:318
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL30
Gene (Uniprot):RPL30
Chain IDs:BA
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S3A
Gene (Uniprot):RPS3A
Chain IDs:AB (auth: BB)
Chain Length:264
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S27
Gene (Uniprot):RPS27
Chain IDs:AC (auth: BC)
Chain Length:84
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL4
Gene (Uniprot):RPL4
Chain IDs:C
Chain Length:413
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L31
Gene (Uniprot):RPL31
Chain IDs:CA
Chain Length:125
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS1
Chain IDs:BB (auth: CB)
Chain Length:293
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S28
Gene (Uniprot):RPS28
Chain IDs:BC (auth: CC)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL18
Chain IDs:D
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L32
Chain IDs:DA
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S3
Gene (Uniprot):RPS3
Chain IDs:CB (auth: DB)
Chain Length:281
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS14
Gene (Uniprot):RPS29
Chain IDs:CC (auth: DC)
Chain Length:56
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L6
Gene (Uniprot):RPL6
Chain IDs:E
Chain Length:291
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL33
Gene (Uniprot):RPL35A
Chain IDs:EA
Chain Length:110
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S4
Gene (Uniprot):RPS4X
Chain IDs:DB (auth: EB)
Chain Length:263
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S30
Gene (Uniprot):FAU
Chain IDs:DC (auth: EC)
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL30
Gene (Uniprot):RPL7
Chain IDs:F
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L34
Chain IDs:FA
Chain Length:129
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S5
Gene (Uniprot):RPS5
Chain IDs:EB (auth: FB)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S27A
Gene (Uniprot):RPS27A
Chain IDs:EC (auth: FC)
Chain Length:188
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L7A
Gene (Uniprot):RPL7A
Chain IDs:G
Chain Length:319
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L35
Gene (Uniprot):RPL35
Chain IDs:GA
Chain Length:123
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS6
Gene (Uniprot):RPS6
Chain IDs:FB (auth: GB)
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RACK1
Gene (Uniprot):RACK1
Chain IDs:FC (auth: GC)
Chain Length:317
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L9
Gene (Uniprot):RPL9
Chain IDs:H
Chain Length:192
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L36
Gene (Uniprot):RPL36
Chain IDs:HA
Chain Length:105
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS7
Gene (Uniprot):RPS7
Chain IDs:GB (auth: HB)
Chain Length:432
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eukaryotic elongation factor 1 A
Gene (Uniprot):EEF1A1
Chain IDs:JC (auth: HC)
Chain Length:462
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L10
Gene (Uniprot):RPL10
Chain IDs:I
Chain Length:214
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L37
Gene (Uniprot):RPL37
Chain IDs:IA
Chain Length:97
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S8
Gene (Uniprot):RPS8
Chain IDs:HB (auth: IB)
Chain Length:208
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:peptide
Chain IDs:GC (auth: IC)
Chain Length:4
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL5
Gene (Uniprot):RPL11
Chain IDs:J
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL38
Gene (Uniprot):RPL38
Chain IDs:JA
Chain Length:70
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S9
Gene (Uniprot):RPS9
Chain IDs:IB (auth: JB)
Chain Length:194
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL13
Chain IDs:K
Chain Length:211
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL39
Gene (Uniprot):LOC100343258
Chain IDs:KA
Chain Length:51
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S10
Chain IDs:JB (auth: KB)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL14
Gene (Uniprot):RPL14
Chain IDs:L
Chain Length:218
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL40
Chain IDs:LA
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S11
Gene (Uniprot):RPS11
Chain IDs:KB (auth: LB)
Chain Length:158
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL15
Gene (Uniprot):RPL15
Chain IDs:M
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL41
Gene (Uniprot):RPL41
Chain IDs:MA
Chain Length:25
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S12
Gene (Uniprot):RPS12
Chain IDs:LB (auth: MB)
Chain Length:132
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL13
Chain IDs:N
Chain Length:203
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL42
Chain IDs:NA
Chain Length:106
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS15
Gene (Uniprot):RPS13
Chain IDs:MB (auth: NB)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL22
Chain IDs:O
Chain Length:213
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL43
Gene (Uniprot):RPL37A
Chain IDs:OA
Chain Length:92
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S14
Chain IDs:NB (auth: OB)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL18
Gene (Uniprot):RPL18
Chain IDs:P
Chain Length:188
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L28
Gene (Uniprot):RPL28
Chain IDs:PA
Chain Length:137
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S15
Gene (Uniprot):RPS15
Chain IDs:OB (auth: PB)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL19
Chain IDs:Q
Chain Length:212
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS9
Gene (Uniprot):RPS16
Chain IDs:PB (auth: QB)
Chain Length:172
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL20
Chain IDs:R
Chain Length:224
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L12
Gene (Uniprot):RPL12
Chain IDs:QA (auth: RA)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS17
Gene (Uniprot):RPS17
Chain IDs:QB (auth: RB)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL21
Gene (Uniprot):RPL21
Chain IDs:S
Chain Length:160
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:P-site tRNA
Chain IDs:RA (auth: SA)
Chain Length:76
Number of Molecules:1
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S18
Gene (Uniprot):RPS18
Chain IDs:RB (auth: SB)
Chain Length:152
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL22
Gene (Uniprot):RPL22
Chain IDs:T
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:E-site tRNA
Chain IDs:SA (auth: TA)
Chain Length:76
Number of Molecules:1
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S19
Gene (Uniprot):RPS19
Chain IDs:SB (auth: TB)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L23
Gene (Uniprot):RPL23
Chain IDs:U
Chain Length:140
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:A-site tRNA
Chain IDs:TA (auth: UA)
Chain Length:75
Number of Molecules:1
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS10
Gene (Uniprot):RPS20
Chain IDs:TB (auth: UB)
Chain Length:119
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL24
Gene (Uniprot):RPL24
Chain IDs:V
Chain Length:157
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:UA (auth: VA)
Chain Length:12
Number of Molecules:1
Biological Source:Lampyridae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S21
Gene (Uniprot):RPS21
Chain IDs:UB (auth: VB)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL23
Gene (Uniprot):RPL23A
Chain IDs:W
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:28S rRNA
Chain IDs:VA (auth: WA)
Chain Length:3584
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S15A
Gene (Uniprot):RPS15A
Chain IDs:VB (auth: WB)
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L26
Gene (Uniprot):RPL26
Chain IDs:X
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:WA (auth: XA)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S23
Gene (Uniprot):RPS23
Chain IDs:WB (auth: XB)
Chain Length:143
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L27
Gene (Uniprot):RPL27
Chain IDs:Y
Chain Length:136
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:XA (auth: YA)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S24
Gene (Uniprot):LOC100338405
Chain IDs:XB (auth: YB)
Chain Length:131
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL15
Gene (Uniprot):RPL27A
Chain IDs:Z
Chain Length:148
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:YA (auth: ZA)
Chain Length:1869
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS25
Gene (Uniprot):RPS25
Chain IDs:YB (auth: ZB)
Chain Length:124
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RPLP0
Gene (Uniprot):RPLP0
Chain IDs:HC (auth: b)
Chain Length:318
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:RPLP peptide
Chain IDs:IC (auth: c)
Chain Length:413
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Primary Citation
Rapid purification reveals structural insights into transient ribosome states
To Be Published ? ? ? (?)
Primary Citation of related structures