8VTK image
Deposition Date 2024-01-26
Release Date 2024-03-13
Last Version Date 2025-09-24
Entry Detail
PDB ID:
8VTK
Keywords:
Title:
Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.07 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein H chain
Chain IDs:A (auth: H)
Chain Length:240
Number of Molecules:1
Biological Source:Cereibacter sphaeroides
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Chain IDs:B (auth: L)
Chain Length:281
Number of Molecules:1
Biological Source:Cereibacter sphaeroides
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Chain IDs:C (auth: M)
Chain Length:301
Number of Molecules:1
Biological Source:Cereibacter sphaeroides
Primary Citation
Application of Amber Suppression To Study the Role of Tyr M210 in Electron Transfer in Rhodobacter sphaeroides Photosynthetic Reaction Centers.
J.Phys.Chem.B 129 3317 3333 (2025)
PMID: 40134359 DOI: 10.1021/acs.jpcb.5c00082

Abstact

The initial light-induced electron transfer (ET) steps in the bacterial photosynthetic reaction center (RC) have been extensively studied and provide a paradigm for connecting structure and function. Although RCs have local pseudo-C2 symmetry, ET only occurs along the A branch of chromophores. Tyrosine M210 is a key symmetry-breaking residue adjacent to bacteriochlorophyll BA that bridges the primary electron donor P and the bacteriopheophytin acceptor HA. We used amber suppression to incorporate phenylalanine variants with different electron-withdrawing/-donating capabilities at the position M210. X-ray data generally reveal no appreciable structural changes due to the mutations. P* decay and P+HA- formation are multiexponential (∼2 to 9, ∼10 to 60, and ∼100 to 300 ps) and temperature dependent. The 1020 nm transient-absorption band of P+BA- is barely resolved for a few variants at 295 K and for none at 77 K. The results indicate a change from two-step ET for wild-type RCs to the dominance of one-step superexchange ET for the mutants. Resonance Stark spectroscopy reveals that the free energy of P+BA- changes by -57 to +66 meV among the phenylalanine variants. Because P+BA- apparently lies above P* in all phenylalanine variants, the perturbations primarily affect the energy denominator for superexchange mixing. The findings deepen insight into primary ET in the bacterial RC.

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