8VRK image
Entry Detail
PDB ID:
8VRK
EMDB ID:
Keywords:
Title:
Rigid body fitted model for refined density map of gamma tubulin ring complex capped microtubule
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-01-22
Release Date:
2024-03-27
Method Details:
Experimental Method:
Resolution:
8.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tubulin alpha-1B chain
Chain IDs:A (auth: 1), W (auth: O), X (auth: P), Y (auth: Q), Z (auth: R), AA (auth: S), BA (auth: T), CA (auth: U), DA (auth: V), EA (auth: W), FA (auth: X), GA (auth: Y), HA (auth: Z)
Chain Length:457
Number of Molecules:13
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Tubulin beta-3 chain
Chain IDs:B (auth: 2), IA (auth: o), JA (auth: p), KA (auth: q), LA (auth: r), MA (auth: s), NA (auth: t), OA (auth: u), PA (auth: v), QA (auth: w), RA (auth: x), SA (auth: y), TA (auth: z)
Chain Length:456
Number of Molecules:13
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:TUBGCP6 protein
Chain IDs:C (auth: 3), E (auth: 6), T (auth: L)
Chain Length:1811
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component 3
Chain IDs:D (auth: 5), J (auth: B), L (auth: D), N (auth: F), P (auth: H), V (auth: N)
Chain Length:907
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Mitotic-spindle organizing protein 1
Chain IDs:F (auth: 7), G (auth: 8)
Chain Length:82
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Actin, cytoplasmic 1
Chain IDs:H (auth: 9)
Chain Length:375
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Isoform 3 of Gamma-tubulin complex component 2
Chain IDs:I (auth: A), K (auth: C), M (auth: E), O (auth: G), U (auth: M)
Chain Length:930
Number of Molecules:5
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Isoform 2 of Gamma-tubulin complex component 4
Chain IDs:Q (auth: I), S (auth: K)
Chain Length:666
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component 5
Chain IDs:R (auth: J)
Chain Length:457
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Tubulin gamma-1 chain
Chain IDs:UA (auth: a), VA (auth: b), WA (auth: c), XA (auth: d), YA (auth: e), ZA (auth: f), AB (auth: g), BB (auth: h), CB (auth: i), DB (auth: j), EB (auth: k), FB (auth: l), GB (auth: m), HB (auth: n)
Chain Length:930
Number of Molecules:14
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of the gamma-tubulin ring complex-capped microtubule.
Nat.Struct.Mol.Biol. 31 1124 1133 (2024)
PMID: 38609661 DOI: 10.1038/s41594-024-01264-z

Abstact

Microtubules are composed of α-tubulin and β-tubulin dimers positioned head-to-tail to form protofilaments that associate laterally in varying numbers. It is not known how cellular microtubules assemble with the canonical 13-protofilament architecture, resulting in micrometer-scale α/β-tubulin tracks for intracellular transport that align with, rather than spiral along, the long axis of the filament. We report that the human ~2.3 MDa γ-tubulin ring complex (γ-TuRC), an essential regulator of microtubule formation that contains 14 γ-tubulins, selectively nucleates 13-protofilament microtubules. Cryogenic electron microscopy reconstructions of γ-TuRC-capped microtubule minus ends reveal the extensive intra-domain and inter-domain motions of γ-TuRC subunits that accommodate luminal bridge components and establish lateral and longitudinal interactions between γ-tubulins and α-tubulins. Our structures suggest that γ-TuRC, an inefficient nucleation template owing to its splayed conformation, can transform into a compacted cap at the microtubule minus end and set the lattice architecture of cellular microtubules.

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