8VQR image
Entry Detail
PDB ID:
8VQR
Title:
Crystal structure of chimeric SARS-CoV-2 RBD complexed with chimeric raccoon dog ACE2
Biological Source:
PDB Version:
Deposition Date:
2024-01-19
Release Date:
2024-05-01
Method Details:
Experimental Method:
Resolution:
2.57 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Angiotensin-converting enzyme,Processed angiotensin-converting enzyme 2
Chain IDs:A, B
Chain Length:602
Number of Molecules:2
Biological Source:Nyctereutes procyonoides, Homo sapiens
Polymer Type:polypeptide(L)
Description:Spike protein S1
Mutations:Q321V, T323S, E324G, S325D, I326V, A348P, N354E, R357K, A372T, S373F, P384A, T393S, I402V, R403K, E406D, K417V, T430M, I434L, S438T, N439R, L441I, S443A, V445S, G446T, L452K, H519N, K529L, N532D, V534I, N536S
Chain IDs:C (auth: E), D (auth: F)
Chain Length:232
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
Primary Citation
Structural basis for raccoon dog receptor recognition by SARS-CoV-2.
Plos Pathog. 20 e1012204 e1012204 (2024)
PMID: 38709834 DOI: 10.1371/journal.ppat.1012204

Abstact

Since the COVID-19 outbreak, raccoon dogs have been suggested as a potential intermediary in transmitting SARS-CoV-2 to humans. To understand their role in the COVID-19 pandemic and the species barrier for SARS-CoV-2 transmission to humans, we analyzed how their ACE2 protein interacts with SARS-CoV-2 spike protein. Biochemical data showed that raccoon dog ACE2 is an effective receptor for SARS-CoV-2 spike protein, though not as effective as human ACE2. Structural comparisons highlighted differences in the virus-binding residues of raccoon dog ACE2 compared to human ACE2 (L24Q, Y34H, E38D, T82M, R353K), explaining their varied effectiveness as receptors for SARS-CoV-2. These variations contribute to the species barrier that exists between raccoon dogs and humans regarding SARS-CoV-2 transmission. Identifying these barriers can help assess the susceptibility of other mammals to SARS-CoV-2. Our research underscores the potential of raccoon dogs as SARS-CoV-2 carriers and identifies molecular barriers that affect the virus's ability to jump between species.

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