8VQK image
Deposition Date 2024-01-18
Release Date 2024-10-09
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8VQK
Title:
YcjN from Escherichia coli
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative ABC transporter periplasmic-binding protein YcjN
Gene (Uniprot):ycjN
Chain IDs:A, B
Chain Length:440
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
Expression, purification, and characterization of diacylated Lipo-YcjN from Escherichia coli.
J.Biol.Chem. 300 107853 107853 (2024)
PMID: 39362470 DOI: 10.1016/j.jbc.2024.107853

Abstact

YcjN is a putative substrate binding protein expressed from a cluster of genes involved in carbohydrate import and metabolism in Escherichia coli. Here, we determine the crystal structure of YcjN to a resolution of 1.95 Å, revealing that its three-dimensional structure is similar to substrate binding proteins in subcluster D-I, which includes the well-characterized maltose binding protein. Furthermore, we found that recombinant overexpression of YcjN results in the formation of a lipidated form of YcjN that is posttranslationally diacylated at cysteine 21. Comparisons of size-exclusion chromatography profiles and dynamic light scattering measurements of lipidated and nonlipidated YcjN proteins suggest that lipidated YcjN aggregates in solution via its lipid moiety. Additionally, bioinformatic analysis indicates that YcjN-like proteins may exist in both Bacteria and Archaea, potentially in both lipidated and nonlipidated forms. Together, our results provide a better understanding of the aggregation properties of recombinantly expressed bacterial lipoproteins in solution and establish a foundation for future studies that aim to elucidate the role of these proteins in bacterial physiology.

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