8VQ2 image
Deposition Date 2024-01-17
Release Date 2024-08-28
Last Version Date 2024-08-28
Entry Detail
PDB ID:
8VQ2
Keywords:
Title:
HSV1 polymerase ternary complex with dsDNA and compound 44
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.83 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA polymerase
Chain IDs:A, D (auth: B)
Chain Length:1163
Number of Molecules:2
Biological Source:Human alphaherpesvirus 1
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*GP*GP*TP*AP*GP*GP*GP*GP*AP*AP*GP*GP*AP*T)-3')
Chain IDs:B (auth: C), E
Chain Length:15
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*TP*AP*C)-3')
Chain IDs:C (auth: D), F
Chain Length:13
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Discovery of Broad-Spectrum Herpes Antiviral Oxazolidinone Amide Derivatives and Their Structure-Activity Relationships.
Acs Med.Chem.Lett. 15 1232 1241 (2024)
PMID: 39140041 DOI: 10.1021/acsmedchemlett.4c00117

Abstact

Herpesvirus infections are ubiquitous, with over 95% of the adult population infected by at least one strain. While most of these infections resolve without treatment in healthy individuals, they can cause significant morbidity and mortality in immunocompromised, stem cell, or organ transplant patients. Current nucleoside standards of care provide meaningful benefit but are limited due to poor tolerability, resistance, and generally narrow spectrum of activity. Herpesviruses share a conserved DNA polymerase, the inhibition of which is validated as an effective strategy to disrupt viral replication. By utilizing a non-nucleoside inhibitor of the viral DNA polymerase, we sought to develop agents covering multiple herpesviruses (e.g., CMV, VZV, HSV1/2, EBV, and HHV6). Herein is described the invention of an oxazolidinone class of broad-spectrum non-nucleoside herpes antiviral inhibitors. A lead compound (42) with potent biochemical and broad-spectrum cellular activity was found to be efficacious in murine models against both HSV-1 and CMV infection.

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Disease

Primary Citation of related structures