ISDA: 8VLR

Deposition Date 2024-01-12

Release Date 2025-01-15

Last Version Date 2025-01-15

Entry Detail

PDB ID:

8VLR

Keywords:

NUCLEAR PROTEIN

Title:

Cryo-EM structure of native H2AK119bu nucleosome at 2.6

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.60 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A, E
Chain Length:98
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P68431 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F
Chain Length:84
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:C, G
Chain Length:108
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P04908 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-A
Gene (Uniprot):H2BC1
Chain IDs:D, H
Chain Length:93
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q96A08 Pfam ID:PF00125

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (136-MER)
Chain IDs:I (auth: K)
Chain Length:136
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (136-MER)
Chain IDs:J (auth: L)
Chain Length:136
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

Role of histone variants H2BC1 and H2AZ.2 in H2AK119ub nucleosome organization and Polycomb gene silencing

Shen, X.Y, Chen, C.X, Wang, Y, Zheng, W, Zheng, J.H, Jones, A.E, Zhu, B, Zhang, H, Lyons, C, Rijal, A, Moley, J.A, Cao, G.S, Liu, K, Winn, R, McGinty, R.K, Zhang, K, Wang, H.B.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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