8VK1 image
Deposition Date 2024-01-08
Release Date 2024-06-19
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8VK1
Title:
X-ray crystal structure of human IgE 4C8 Fab complex with Der p 2.0103
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.24
R-Value Work:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Der p 2 variant 3
Chain IDs:B (auth: D), F (auth: A)
Chain Length:129
Number of Molecules:2
Biological Source:Dermatophagoides pteronyssinus
Polymer Type:polypeptide(L)
Molecule:IgE 4C8 light chain
Chain IDs:A (auth: E), D (auth: B)
Chain Length:212
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:IgE 4C8 heavy chain
Chain IDs:C (auth: F), E (auth: C)
Chain Length:232
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural analysis of human IgE monoclonal antibody epitopes on dust mite allergen Der p 2.
J.Allergy Clin.Immunol. 154 447 457 (2024)
PMID: 38697404 DOI: 10.1016/j.jaci.2024.04.017

Abstact

BACKGROUND Human IgE (hIgE) mAbs against major mite allergen Der p 2 developed using human hybridoma technology were used for IgE epitope mapping and analysis of epitopes associated with the hIgE repertoire. OBJECTIVE We sought to elucidate the new hIgE mAb 4C8 epitope on Der p 2 and compare it to the hIgE mAb 2F10 epitope in the context of the allergenic structure of Der p 2. METHODS X-ray crystallography was used to determine the epitope of anti-Der p 2 hIgE mAb 4C8. Epitope mutants created by targeted mutagenesis were analyzed by immunoassays and in vivo using a human high-affinity IgE receptor (FcεRIα)-transgenic mouse model of passive systemic anaphylaxis. RESULTS The structure of recombinant Der p 2 with hIgE mAb 4C8 Fab was determined at 3.05 Å. The newly identified epitope region does not overlap with the hIgE mAb 2F10 epitope or the region recognized by 3 overlapping hIgE mAbs (1B8, 5D10, and 2G1). Compared with wild-type Der p 2, single or double 4C8 and 2F10 epitope mutants bound less IgE antibodies from allergic patients by as much as 93%. Human FcεRIα-transgenic mice sensitized by hIgE mAbs, which were susceptible to anaphylaxis when challenged with wild-type Der p 2, could no longer cross-link FcεRI to induce anaphylaxis when challenged with the epitope mutants. CONCLUSIONS These data establish the structural basis of allergenicity of 2 hIgE mAb nonoverlapping epitopes on Der p 2, which appear to make important contributions to the hIgE repertoire against Der p 2 and provide molecular targets for future design of allergy therapeutics.

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