8VJI image
Deposition Date 2024-01-06
Release Date 2024-10-02
Last Version Date 2024-10-02
Entry Detail
PDB ID:
8VJI
Keywords:
Title:
Cryo-EM of capsid of bacteriophage Chi
Biological Source:
Source Organism:
Chivirus chi (Taxon ID: 1541887)
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):17
Chain IDs:A, B, C, D, E, F, G
Chain Length:354
Number of Molecules:7
Biological Source:Chivirus chi
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Decorator protein D
Gene (Uniprot):16
Chain IDs:H (auth: a), I (auth: b), J (auth: c), K (auth: d), L (auth: e), M (auth: f), N (auth: g)
Chain Length:354
Number of Molecules:7
Biological Source:Chivirus chi
Ligand Molecules
Primary Citation
Cryo-EM structure of flagellotropic bacteriophage Chi.
Structure 32 856 865.e3 (2024)
PMID: 38614087 DOI: 10.1016/j.str.2024.03.011

Abstact

The flagellotropic bacteriophage χ (Chi) infects bacteria via the flagellar filament. Despite years of study, its structural architecture remains partly characterized. Through cryo-EM, we unveil χ's nearly complete structure, encompassing capsid, neck, tail, and tail tip. While the capsid and tail resemble phage YSD1, the neck and tail tip reveal new proteins and their arrangement. The neck shows a unique conformation of the tail tube protein, forming a socket-like structure for attachment to the neck. The tail tip comprises four proteins, including distal tail protein (DTP), two baseplate hub proteins (BH1P and BH2P), and tail tip assembly protein (TAP) exhibiting minimal organization compared to other siphophages. Deviating from the consensus in other siphophages, DTP in χ forms a trimeric assembly, reducing tail symmetry from 6-fold to 3-fold at the tip. These findings illuminate the previously unexplored structural organization of χ's neck and tail tip.

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