8VH8 image
Deposition Date 2023-12-31
Release Date 2024-09-04
Last Version Date 2025-03-12
Entry Detail
PDB ID:
8VH8
Keywords:
Title:
Crystal structure of heparosan synthase 2 from Pasteurella multocida at 2.85 A
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heparosan synthase B
Gene (Uniprot):hssB
Chain IDs:A, B, C, D
Chain Length:552
Number of Molecules:4
Biological Source:Pasteurella multocida
Primary Citation
Structural and Functional Analysis of Heparosan Synthase 2 from Pasteurella multocida (PmHS2) to Improve the Synthesis of Heparin.
Acs Catalysis 14 6577 6588 (2024)
PMID: 39990868 DOI: 10.1021/acscatal.4c00677

Abstact

Heparin is a widely used drug to treat thrombotic disorders in hospitals. Heparosan synthase 2 from Pasteurella multocida (PmHS2) is a key enzyme used for the chemoenzymatic synthesis of heparin oligosaccharides. It has both activities: glucosaminyl transferase activity and glucuronyl transferase activity; however, the mechanism to carry out the glyco-oligomerization is unknown. Here, we report crystal structures of PmHS2 constructs with bound uridine diphosphate (UDP) and a cryo-EM structure of PmHS2 in complex with UDP and a heptasaccharide (NS 7-mer) substrate. Using a LC-MC analytical method, we discovered the enzyme displays both a two-step concerted oligomerization mode and a distributive oligomerization mode depending on the non-reducing end of the starting oligosaccharide primer. Removal of 7 amino acid residues from the C-terminus results in an enzymatically active monomer instead of dimer and loses the concerted oligomerization mode of activity. In addition, the monomer construct can transfer N-acetyl glucosamine at a substrate concentration that is ∼7-fold higher than wildtype enzyme. It was also determined that an F529A mutant can transfer an N-sulfo glucosamine (GlcNS) saccharide from a previously inactive UDP-GlcNS donor. Performing the glyco-transfer reaction at a high substrate concentration and the capability of using unnatural donors are desirable to simplify the chemoenzymatic synthesis to prepare heparin-based therapeutics.

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