8VFT image
Deposition Date 2023-12-22
Release Date 2024-12-25
Last Version Date 2024-12-25
Entry Detail
PDB ID:
8VFT
Keywords:
Title:
Translating 80S rabbit ribosome stalled by emetine with eEF2
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:P-site tRNA
Chain IDs:GC (auth: 2)
Chain Length:76
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:E-site tRNA
Chain IDs:EC (auth: 3)
Chain Length:75
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:28S rRNA
Chain IDs:SA (auth: 5)
Chain Length:3543
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:TA (auth: 7)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:UA (auth: 8)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:WA (auth: 9)
Chain Length:1869
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL2
Gene (Uniprot):RPL8
Chain IDs:A
Chain Length:257
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS2
Gene (Uniprot):RPSA
Chain IDs:XA (auth: AA)
Chain Length:295
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL3
Gene (Uniprot):RPL3
Chain IDs:B
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS1
Gene (Uniprot):RPS3A
Chain IDs:YA (auth: BB)
Chain Length:264
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL4
Gene (Uniprot):RPL4
Chain IDs:C
Chain Length:425
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS5
Chain IDs:ZA (auth: CC)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL18
Chain IDs:D
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS3
Chain IDs:AB (auth: DD)
Chain Length:243
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL6
Gene (Uniprot):RPL6
Chain IDs:E
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS4
Chain IDs:BB (auth: EE)
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL30
Chain IDs:F
Chain Length:247
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS7
Gene (Uniprot):RPS5
Chain IDs:CB (auth: FF)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL8
Gene (Uniprot):RPL7A
Chain IDs:G
Chain Length:117
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS6
Chain IDs:DB (auth: GG)
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL6
Gene (Uniprot):RPL9
Chain IDs:H
Chain Length:192
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS7
Gene (Uniprot):RPS7
Chain IDs:EB (auth: HH)
Chain Length:194
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL16
Gene (Uniprot):RPL10
Chain IDs:I
Chain Length:214
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS8
Gene (Uniprot):RPS8
Chain IDs:FB (auth: II)
Chain Length:208
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL5
Gene (Uniprot):RPL11
Chain IDs:J
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS4
Gene (Uniprot):RPS9
Chain IDs:GB (auth: JJ)
Chain Length:194
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS10
Chain IDs:HB (auth: KK)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL13
Chain IDs:K (auth: L)
Chain Length:211
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS17
Gene (Uniprot):RPS11
Chain IDs:IB (auth: LL)
Chain Length:158
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL14
Gene (Uniprot):RPL14
Chain IDs:L (auth: M)
Chain Length:93
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS12
Gene (Uniprot):RPS12
Chain IDs:JB (auth: MM)
Chain Length:132
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL15
Gene (Uniprot):RPL15
Chain IDs:M (auth: N)
Chain Length:25
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS15
Gene (Uniprot):RPS13
Chain IDs:KB (auth: NN)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL13
Chain IDs:N (auth: O)
Chain Length:106
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS11
Chain IDs:LB (auth: OO)
Chain Length:168
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL22
Chain IDs:O (auth: P)
Chain Length:92
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS19
Gene (Uniprot):RPS15
Chain IDs:MB (auth: PP)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL18
Gene (Uniprot):RPL18
Chain IDs:P (auth: Q)
Chain Length:188
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS9
Gene (Uniprot):RPS16
Chain IDs:NB (auth: QQ)
Chain Length:146
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL19
Gene (Uniprot):LOC100352118
Chain IDs:Q (auth: R)
Chain Length:196
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS17
Gene (Uniprot):RPS17
Chain IDs:OB (auth: RR)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL20
Gene (Uniprot):RPL18A
Chain IDs:R (auth: S)
Chain Length:318
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS13
Gene (Uniprot):RPS18
Chain IDs:PB (auth: SS)
Chain Length:152
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL21
Gene (Uniprot):RPL21
Chain IDs:S (auth: T)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS19
Gene (Uniprot):RPS19
Chain IDs:QB (auth: TT)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL22
Gene (Uniprot):RPL22
Chain IDs:T (auth: U)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS10
Gene (Uniprot):RPS20
Chain IDs:RB (auth: UU)
Chain Length:119
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL14
Gene (Uniprot):RPL23
Chain IDs:U (auth: V)
Chain Length:140
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS21
Gene (Uniprot):RPS21
Chain IDs:SB (auth: VV)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL24
Gene (Uniprot):RPL24
Chain IDs:V (auth: W)
Chain Length:6
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS8
Gene (Uniprot):RPS15A
Chain IDs:TB (auth: WW)
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL23
Gene (Uniprot):RPL23A
Chain IDs:W (auth: X)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS12
Gene (Uniprot):RPS23
Chain IDs:UB (auth: XX)
Chain Length:143
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL24
Gene (Uniprot):RPL26
Chain IDs:X (auth: Y)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS24
Chain IDs:VB (auth: YY)
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL27
Gene (Uniprot):RPL27
Chain IDs:Y (auth: Z)
Chain Length:136
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS25
Gene (Uniprot):RPS25
Chain IDs:WB (auth: ZZ)
Chain Length:125
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL15
Gene (Uniprot):RPL27A
Chain IDs:Z (auth: a)
Chain Length:257
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS26
Gene (Uniprot):RPS26
Chain IDs:XB (auth: aa)
Chain Length:295
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL29
Gene (Uniprot):RPL29
Chain IDs:AA (auth: b)
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS27
Gene (Uniprot):RPS27
Chain IDs:YB (auth: bb)
Chain Length:264
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL30
Gene (Uniprot):RPL30
Chain IDs:BA (auth: c)
Chain Length:425
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS28
Gene (Uniprot):RPS28
Chain IDs:ZB (auth: cc)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL31
Gene (Uniprot):RPL31
Chain IDs:CA (auth: d)
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uS14
Gene (Uniprot):RPS29
Chain IDs:AC (auth: dd)
Chain Length:243
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL32
Chain IDs:DA (auth: e)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS30
Gene (Uniprot):FAU
Chain IDs:BC (auth: ee)
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL33
Gene (Uniprot):RPL35A
Chain IDs:EA (auth: f)
Chain Length:247
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eS31
Gene (Uniprot):RPS27A
Chain IDs:CC (auth: ff)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL34
Gene (Uniprot):RPL34
Chain IDs:FA (auth: g)
Chain Length:117
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:RACK1
Gene (Uniprot):RACK1
Chain IDs:DC (auth: gg)
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL29
Gene (Uniprot):RPL35
Chain IDs:GA (auth: h)
Chain Length:192
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL36
Gene (Uniprot):RPL36
Chain IDs:HA (auth: i)
Chain Length:214
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL37
Gene (Uniprot):RPL37
Chain IDs:IA (auth: j)
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL38
Gene (Uniprot):RPL38
Chain IDs:JA (auth: k)
Chain Length:70
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL39
Gene (Uniprot):LOC100343258
Chain IDs:KA (auth: l)
Chain Length:211
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL40
Gene (Uniprot):UBA52
Chain IDs:LA (auth: m)
Chain Length:93
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL41
Gene (Uniprot):RPL41
Chain IDs:MA (auth: n)
Chain Length:25
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL42
Chain IDs:NA (auth: o)
Chain Length:106
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL43
Gene (Uniprot):RPL37A
Chain IDs:OA (auth: p)
Chain Length:92
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eL28
Gene (Uniprot):RPL28
Chain IDs:PA (auth: r)
Chain Length:196
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL10
Gene (Uniprot):RPLP0
Chain IDs:QA (auth: s)
Chain Length:318
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:uL11
Gene (Uniprot):RPL12
Chain IDs:RA (auth: t)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:eEF2
Gene (Uniprot):EEF2
Chain IDs:VA (auth: v)
Chain Length:140
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:FC (auth: w)
Chain Length:6
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Primary Citation
Structure of emetine-stalled ribosome
To Be Published ? ? ? (?)
Primary Citation of related structures