8VFT image
Deposition Date 2023-12-22
Release Date 2024-12-25
Last Version Date 2025-10-15
Entry Detail
PDB ID:
8VFT
Keywords:
RIBOSOME
Title:
Translating 80S rabbit ribosome stalled by emetine with eEF2
Biological Source:
Source Organism:
Oryctolagus cuniculus (Taxon ID: 9986)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8VFT validation report
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:P-site tRNA
Chain IDs:GC (auth: 2)
Chain Length:76
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:E-site tRNA
Chain IDs:EC (auth: 3)
Chain Length:75
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:28S rRNA
Chain IDs:SA (auth: 5)
Chain Length:3543
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:TA (auth: 7)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:UA (auth: 8)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:WA (auth: 9)
Chain Length:1869
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL2
Gene (Uniprot):RPL8
Chain IDs:A
Chain Length:148
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TT27 Pfam ID:PF00181, PF03947
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS2
Gene (Uniprot):RPSA
Chain IDs:XA (auth: AA)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TLT8 Pfam ID:PF00318, PF16122
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL3
Gene (Uniprot):RPL3
Chain IDs:B
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TL06 Pfam ID:PF00297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS1
Gene (Uniprot):RPS3A
Chain IDs:YA (auth: BB)
Chain Length:84
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SS70 Pfam ID:PF01015
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL4
Gene (Uniprot):RPL4
Chain IDs:C
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SVW5 Pfam ID:PF00573, PF14374
Polymer Type:polypeptide(L)
Molecule:uS5
Chain IDs:ZA (auth: CC)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL18
Chain IDs:D
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:P19949
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS3
Chain IDs:AB (auth: DD)
Chain Length:243
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0AAG1WUK3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL6
Gene (Uniprot):RPL6
Chain IDs:E
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SKF7 Pfam ID:PF03868, PF01159
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS4
Chain IDs:BB (auth: EE)
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TA47
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL30
Chain IDs:F
Chain Length:110
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0AAG1W3S3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS7
Gene (Uniprot):RPS5
Chain IDs:CB (auth: FF)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TFM5 Pfam ID:PF00177
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL8
Gene (Uniprot):RPL7A
Chain IDs:G
Chain Length:319
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1STW0 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS6
Chain IDs:DB (auth: GG)
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A5K1UJS7 Pfam ID:PF01092
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL6
Gene (Uniprot):RPL9
Chain IDs:H
Chain Length:192
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SWI6 Pfam ID:PF00347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS7
Gene (Uniprot):RPS7
Chain IDs:EB (auth: HH)
Chain Length:194
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SVB0
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL16
Gene (Uniprot):RPL10
Chain IDs:I
Chain Length:214
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:B7NZQ2 Pfam ID:PF00252
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS8
Gene (Uniprot):RPS8
Chain IDs:FB (auth: II)
Chain Length:208
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TJW1 Pfam ID:PF01201
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL5
Gene (Uniprot):RPL11
Chain IDs:J
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TUB8 Pfam ID:PF00281, PF00673
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS4
Gene (Uniprot):RPS9
Chain IDs:GB (auth: JJ)
Chain Length:194
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:B7NZS8 Pfam ID:PF00163, PF01479
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS10
Chain IDs:HB (auth: KK)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TPV3 Pfam ID:PF03501
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL13
Chain IDs:K (auth: L)
Chain Length:211
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TKB3 Pfam ID:PF01294
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS17
Gene (Uniprot):RPS11
Chain IDs:IB (auth: LL)
Chain Length:158
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TRM4 Pfam ID:PF16205, PF00366
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL14
Gene (Uniprot):RPL14
Chain IDs:L (auth: M)
Chain Length:93
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SZ12 Pfam ID:PF01929
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS12
Gene (Uniprot):RPS12
Chain IDs:JB (auth: MM)
Chain Length:132
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SFR8 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL15
Gene (Uniprot):RPL15
Chain IDs:M (auth: N)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T0C1 Pfam ID:PF00827
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS15
Gene (Uniprot):RPS13
Chain IDs:KB (auth: NN)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SP51 Pfam ID:PF08069, PF00312
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL13
Chain IDs:N (auth: O)
Chain Length:106
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TVS8
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS11
Chain IDs:LB (auth: OO)
Chain Length:168
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0AAA9WYR1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL22
Chain IDs:O (auth: P)
Chain Length:92
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SCJ6 Pfam ID:PF00237
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS19
Gene (Uniprot):RPS15
Chain IDs:MB (auth: PP)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U0Q2 Pfam ID:PF00203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL18
Gene (Uniprot):RPL18
Chain IDs:P (auth: Q)
Chain Length:188
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TFE0 Pfam ID:PF17135
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS9
Gene (Uniprot):RPS16
Chain IDs:NB (auth: QQ)
Chain Length:146
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SGX4 Pfam ID:PF00380
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL19
Gene (Uniprot):LOC100352118
Chain IDs:Q (auth: R)
Chain Length:137
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TJR3 Pfam ID:PF01280
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS17
Gene (Uniprot):RPS17
Chain IDs:OB (auth: RR)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TU13 Pfam ID:PF00833
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL20
Gene (Uniprot):RPL18A
Chain IDs:R (auth: S)
Chain Length:176
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TTY7 Pfam ID:PF01775
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS13
Gene (Uniprot):RPS18
Chain IDs:PB (auth: SS)
Chain Length:152
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TPG3 Pfam ID:PF00416
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL21
Gene (Uniprot):RPL21
Chain IDs:S (auth: T)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SHQ2 Pfam ID:PF01157
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS19
Gene (Uniprot):RPS19
Chain IDs:QB (auth: TT)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TN62 Pfam ID:PF01090
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL22
Gene (Uniprot):RPL22
Chain IDs:T (auth: U)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TSG1 Pfam ID:PF01776
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS10
Gene (Uniprot):RPS20
Chain IDs:RB (auth: UU)
Chain Length:119
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SIZ2 Pfam ID:PF00338
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL14
Gene (Uniprot):RPL23
Chain IDs:U (auth: V)
Chain Length:140
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T6D1 Pfam ID:PF00238
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS21
Gene (Uniprot):RPS21
Chain IDs:SB (auth: VV)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TM82 Pfam ID:PF01249
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL24
Gene (Uniprot):RPL24
Chain IDs:V (auth: W)
Chain Length:157
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SE28 Pfam ID:PF01246
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS8
Gene (Uniprot):RPS15A
Chain IDs:TB (auth: WW)
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TG89 Pfam ID:PF00410
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL23
Gene (Uniprot):RPL23A
Chain IDs:W (auth: X)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SE76 Pfam ID:PF03939, PF00276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS12
Gene (Uniprot):RPS23
Chain IDs:UB (auth: XX)
Chain Length:143
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SZ47 Pfam ID:PF00164
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL24
Gene (Uniprot):RPL26
Chain IDs:X (auth: Y)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SQH0 Pfam ID:PF16906, PF00467
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS24
Chain IDs:VB (auth: YY)
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A5F9CBF4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL27
Gene (Uniprot):RPL27
Chain IDs:Y (auth: Z)
Chain Length:136
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TXF6 Pfam ID:PF00467, PF01777
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS25
Gene (Uniprot):RPS25
Chain IDs:WB (auth: ZZ)
Chain Length:125
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TDB3 Pfam ID:PF03297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL15
Gene (Uniprot):RPL27A
Chain IDs:Z (auth: a)
Chain Length:148
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SNY0 Pfam ID:PF00828
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS26
Gene (Uniprot):RPS26
Chain IDs:XB (auth: aa)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TFE8 Pfam ID:PF01283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL29
Gene (Uniprot):RPL29
Chain IDs:AA (auth: b)
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SGR6 Pfam ID:PF01779
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS27
Gene (Uniprot):RPS27
Chain IDs:YB (auth: bb)
Chain Length:84
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TZ76 Pfam ID:PF01667
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL30
Gene (Uniprot):RPL30
Chain IDs:BA (auth: c)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TDL2 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS28
Gene (Uniprot):RPS28
Chain IDs:ZB (auth: cc)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TIB4 Pfam ID:PF01200
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL31
Gene (Uniprot):RPL31
Chain IDs:CA (auth: d)
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SHG0 Pfam ID:PF01198
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS14
Gene (Uniprot):RPS29
Chain IDs:AC (auth: dd)
Chain Length:243
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U7M4 Pfam ID:PF00253
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL32
Chain IDs:DA (auth: e)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TUN8 Pfam ID:PF01655
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS30
Gene (Uniprot):FAU
Chain IDs:BC (auth: ee)
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T8A2 Pfam ID:PF00240, PF04758
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL33
Gene (Uniprot):RPL35A
Chain IDs:EA (auth: f)
Chain Length:110
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SF08 Pfam ID:PF01247
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS31
Gene (Uniprot):RPS27A
Chain IDs:CC (auth: ff)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SK22 Pfam ID:PF00240, PF01599
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL34
Gene (Uniprot):RPL34
Chain IDs:FA (auth: g)
Chain Length:319
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TXG5 Pfam ID:PF01199
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RACK1
Gene (Uniprot):RACK1
Chain IDs:DC (auth: gg)
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SJB4 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL29
Gene (Uniprot):RPL35
Chain IDs:GA (auth: h)
Chain Length:192
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SIT5 Pfam ID:PF00831
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL36
Gene (Uniprot):RPL36
Chain IDs:HA (auth: i)
Chain Length:214
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TTQ5 Pfam ID:PF01158
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL37
Gene (Uniprot):RPL37
Chain IDs:IA (auth: j)
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:U3KPD5 Pfam ID:PF01907
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL38
Gene (Uniprot):RPL38
Chain IDs:JA (auth: k)
Chain Length:70
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U001 Pfam ID:PF01781
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL39
Gene (Uniprot):LOC100343258
Chain IDs:KA (auth: l)
Chain Length:211
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TTN1 Pfam ID:PF00832
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL40
Gene (Uniprot):UBA52
Chain IDs:LA (auth: m)
Chain Length:93
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A2K5PSA0 Pfam ID:PF00240, PF01020
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL41
Gene (Uniprot):RPL41
Chain IDs:MA (auth: n)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A087WNH4 Pfam ID:PF05162
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL42
Chain IDs:NA (auth: o)
Chain Length:106
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T040 Pfam ID:PF00935
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL43
Gene (Uniprot):RPL37A
Chain IDs:OA (auth: p)
Chain Length:92
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SY53 Pfam ID:PF01780
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL28
Gene (Uniprot):RPL28
Chain IDs:PA (auth: r)
Chain Length:137
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U7L1 Pfam ID:PF01778
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL10
Gene (Uniprot):RPLP0
Chain IDs:QA (auth: s)
Chain Length:176
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SPK4 Pfam ID:PF00466, PF17777, PF00428
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL11
Gene (Uniprot):RPL12
Chain IDs:RA (auth: t)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SMR7 Pfam ID:PF03946, PF00298
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eEF2
Gene (Uniprot):EEF2
Chain IDs:VA (auth: v)
Chain Length:140
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:P55823 Pfam ID:PF00009, PF03144, PF14492, PF03764, PF00679
Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:FC (auth: w)
Chain Length:157
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
DDE VA HIS modified residue
Ligand Molecules
34G
GDP
MG
ZN
Primary Citation
GCN1 couples GCN2 to ribosomal state to initiate amino acid response pathway signaling.
Science 390 eads8728 eads8728 (2025)
PMID: 41037622 DOI: 10.1126/science.ads8728

Abstact

During nutrient deprivation, activation of the protein kinase GCN2 regulates cell survival and metabolic homeostasis. In addition to amino acid stress, GCN2 is activated by a variety of cellular stresses. GCN2 activation has been linked to its association with uncharged tRNAs, specific ribosomal proteins, and conditions of translational arrest, but their relative contribution to activation is unclear. Here, we used in vitro translation to reconstitute GCN2 activation by amino acid stress and compared collided ribosome populations induced by diverse translational stressors. Initiation of GCN2 signaling required the di-ribosome sensor GCN1, which recruits GCN2 to ribosomes in a collision-dependent manner, where GCN2 becomes activated by key ribosomal interactions and stably associated with collided ribosomes. Our findings define the molecular requirements and dynamics of GCN2 activation.

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Chemical

Disease

Primary Citation of related structures
8VFT