8VD1 image
Entry Detail
PDB ID:
8VD1
Keywords:
Title:
Crystal Structure of KAI2 from Oryza sativa with MPD
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-12-14
Release Date:
2024-07-31
Method Details:
Experimental Method:
Resolution:
1.29 Å
R-Value Free:
0.16
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Probable esterase D14L
Chain IDs:A
Chain Length:272
Number of Molecules:1
Biological Source:Oryza sativa
Ligand Molecules
Primary Citation
Structural insights into rice KAI2 receptor provide functional implications for perception and signal transduction.
J.Biol.Chem. 300 107593 107593 (2024)
PMID: 39032651 DOI: 10.1016/j.jbc.2024.107593

Abstact

KAI2 receptors, classified as plant α/β hydrolase enzymes, are capable of perceiving smoke-derived butenolide signals and endogenous yet unidentified KAI2-ligands (KLs). While the number of functional KAI2 receptors varies among land plant species, rice has only one KAI2 gene. Rice, a significant crop and representative of grasses, relies on KAI2-mediated Arbuscular mycorrhiza (AM) symbioses to flourish in traditionally arid and nutrient-poor environments. This study presents the first crystal structure of an active rice (Oryza sativa, Os) KAI2 hydrolase receptor. Our structural and biochemical analyses uncover grass-unique pocket residues influencing ligand sensitivity and hydrolytic activity. Through structure-guided analysis, we identify a specific residue whose mutation enables the increase or decrease of ligand perception, catalytic activity, and signal transduction. Furthermore, we investigate OsKAI2-mediated signaling by examining its ability to form a complex with its binding partner, the F-box protein DWARF3 (D3) ubiquitin ligase and subsequent degradation of the target substrate OsSMAX1, demonstrating the significant role of hydrophobic interactions in the OsKAI2-D3 interface. This study provides new insights into the diverse and pivotal roles of the OsKAI2 signaling pathway in the plant kingdom, particularly in grasses.

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