8VA4 image
Deposition Date 2023-12-11
Release Date 2024-10-23
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8VA4
Keywords:
Title:
Crystal structure of CapGH16_3 enzyme retrieved from capybara gut metagenome
Biological Source:
Source Organism:
metagenome (Taxon ID: 256318)
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycoside hydrolase family 16
Chain IDs:A
Chain Length:381
Number of Molecules:1
Biological Source:metagenome
Primary Citation
A functionally augmented carbohydrate utilization locus from herbivore gut microbiota fueled by dietary beta-glucans.
NPJ Biofilms Microbiomes 10 105 105 (2024)
PMID: 39397008 DOI: 10.1038/s41522-024-00578-6

Abstact

Gut microbiota members from the Bacteroidota phylum play a pivotal role in mammalian health and metabolism. They thrive in this diverse ecosystem due to their notable ability to cope with distinct recalcitrant dietary glycans via polysaccharide utilization loci (PULs). Our study reveals that a PUL from an herbivore gut bacterium belonging to the Bacteroidota phylum, with a gene composition similar to that in the human gut, exhibits extended functionality. While the human gut PUL targets mixed-linkage β-glucans specifically, the herbivore gut PUL also efficiently processes linear and substituted β-1,3-glucans. This gain of function emerges from molecular adaptations in recognition proteins and carbohydrate-active enzymes, including a β-glucosidase specialized for β(1,6)-glucosyl linkages, a typical substitution in β(1,3)-glucans. These findings broaden the existing model for non-cellulosic β-glucans utilization by gut bacteria, revealing an additional layer of functional and evolutionary complexity within the gut microbiota, beyond conventional gene insertions/deletions to intricate biochemical interactions.

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