8V9V image
Deposition Date 2023-12-10
Release Date 2025-06-11
Last Version Date 2026-01-21
Entry Detail
PDB ID:
8V9V
Keywords:
Title:
Yeh-like adhesin YhlD receptor binding domain
Biological Source:
Source Organism(s):
Escherichia coli (Taxon ID: 562)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
I 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pilus assembly protein
Chain IDs:A
Chain Length:176
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
The Yeh pilus adhesin is equipped with an alpha-helical flap motif, which contributes to pectin adherence.
Sci Adv 12 eadz1301 eadz1301 (2026)
PMID: 41499512 DOI: 10.1126/sciadv.adz1301

Abstact

The Yeh chaperone-usher pathway (CUP) pilus adhesin is encoded in one-half of all Escherichia coli. Yet little is known about its structure and function in E. coli persistence and pathogenesis. Structural investigations reveal that the adhesin receptor binding domains (RBDs) of YehD and its relative YhlD both share a canonical β-rich core and an α-helical flap motif that is hinged at the distal end of the core. This flap was observed in both open and closed conformations using molecular dynamics simulations. The closed conformation is dependent on a hydrophobic patch of amino acids on the distal end of the flap. Functionally, YehDRBD is able to bind pectin, a polysaccharide ubiquitous in plant material. Mutations that interrupt the closed conformation increase the affinity of the protein to pectin, suggesting that the flap contributes mechanistically to pectin binding. Furthermore, in vivo, the pilus contributes to gastrointestinal (GI) tract colonization in the absence of the type 1 pilus. Hence, we report the ability of YehD to bind pectin representing a possible colonization mechanism of the GI tract via a structurally distinct CUP adhesin.

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Primary Citation of related structures
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